A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae

  1. Martínez Portela, Paulino 1
  2. Sambade, Inés 1
  3. Casanova, Adrian 1
  4. Blanco, Andrés 1
  5. Gundappa, Manu 2
  6. Bean, Tim 2
  7. Macqueen, Daniel L. 2
  8. Houston, Ross D. 2
  9. Villalba, Antonio 3
  10. Kamermans, Pauline 4
  11. Vera, Manuel 1
  1. 1 Universidade de Santiago de Compostela
    info

    Universidade de Santiago de Compostela

    Santiago de Compostela, España

    ROR https://ror.org/030eybx10

  2. 2 Roslin Institute
    info

    Roslin Institute

    Dalkeith, Reino Unido

    ROR https://ror.org/01920rj20

  3. 3 Centro de Investigacións Mariñas (CIMA)
  4. 4 Wageningen University & Research
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Editor: Dryad

Ano de publicación: 2022

Tipo: Dataset

CC0 1.0

DOI: 10.5061/DRYAD.S1RN8PKBP lock_openAcceso aberto editor

Resumo

European flat oyster (Ostrea edulis) is an ecologically and economically important marine bivalve, that has been severely affected by the intracellular parasite Bonamia ostreae. In this study, a flat oyster SNP array (~14,000 SNPs) was used to validate previously reported outlier loci for divergent selection associated with B. ostreae exposure in the Northeast Atlantic Area. A total of 134 wild and hatchery individuals from the North Sea, collected in naïve (NV) and long-term affected (LTA) areas, were analysed. Genetic diversity and differentiation were related to the sampling origin (wild vs hatchery) when using neutral markers, and to bonamiosis status (NV vs LTA) when using outlier loci for divergent selection. Two genetic clusters appeared intermingled in all sampling locations when using outlier loci and their frequency was associated with their bonamiosis status. When both clusters were compared, outlier datasets showed high genetic divergence (FST > 0.25) unlike neutral loci (FST not ≠ 0). Moreover, the cluster associated with LTA samples showed much higher genetic diversity and significant heterozygote excess with outlier loci, but not with neutral data. Most outliers mapped on chromosome 8 (OE-C8) of the flat oyster genome, supporting a main genomic region underlying resilience to bonamiosis. Furthermore, differentially expressed genes previously reported between NV and LTA strains showed higher mapping density on OE-C8. A range of relevant immune functions were specifically enriched among genes annotated on OE-C8, providing hypotheses for resilience mechanisms to an intracellular parasite. The results suggest that marker-assisted selection could be applied to breed resilient strains of O. edulis to bonamiosis, if lower parasite load and/or higher viability of the LTA genetic cluster following B. ostreae infection is demonstrated.