Horizontal Gene Transfer in Bacteria, an Overview of the Mechanisms Involved

  1. Sánchez-Pérez, A.
  2. Sieiro, C.
  3. Villa, T. G.
  4. Rama, JL. R.
  5. Feijoo-Siota, L.
Libro:
Horizontal Gene Transfer

Año de publicación: 2019

Páginas: 3-76

Tipo: Capítulo de Libro

DOI: 10.1007/978-3-030-21862-1_1 GOOGLE SCHOLAR

Referencias bibliográficas

  • Abdel-Monem M, Taucher-Scholz G, Klinkert MQ (1983) Identification of Escherichia coli DNA helicase I as the traI gene product of the F sex factor. Proc Natl Acad Sci USA 80:4659–4663
  • Abe M, Mizuno D (1959) A contribution to the knowledge of pneumococcus transformation during the period between the incorporation of deoxyribonucleic acid and the appearance of streptomycin resistance. Biochim Biophys Acta 32:464–469
  • Abo T, Inamoto S, Ohtsubo E (1991) Specific DNA binding of the TraM protein to the oriT region of plasmid R100. J Bacteriol 173:6347–6354
  • Achtman M, Kennedy N, Skurray R (1977) Cell–cell interactions in conjugating Escherichia coli: role of TraT protein in surface exclusion. Proc Natl Acad Sci USA 74:5104–5108
  • Ackermann HW (2015) The lambda – P22 problem. Bacteriophage 5:e1017084
  • Adams JN, Luria SE (1958) Transduction by bacteriophage P1: abnormal phage function of the transducing particles. Proc Natl Acad Sci USA 44:590–594
  • Agüero ME, Aron L, DeLuca AG, Timmis KN, Cabello FC (1984) A plasmid-encoded outer membrane protein, TraT, enhances resistance of Escherichia coli to phagocytosis. Infect Immun 46:740–746
  • Åkerberg C, Hofvendahl K, Zacchi G, Hahn-Hägerdal B (1998) Modelling the influence of pH, temperature, glucose and lactic acid concentrations on the kinetics of lactic acid production by Lactococcus lactis ssp. lactis ATCC 19435 in whole-wheat flour. Appl Microbiol Biotechnol 49:682–669
  • Albano M, Hahn J, Dubnau D (1987) Expression of competence gene in Bacillus subtilis. J Bacteriol 169:3110–3117
  • Albano M, Breitling AR, Dubnau DA (1989) Nucleotide sequence and genetic organization of the Bacillus subtilis comG operon. J Bacteriol 171:5386–5404
  • Alexander HE, Leidy G (1951) Determination of inherited traits of H. influenzae by desoxyribonucleic acid fractions isolated from type-specific cells. J Exp Med 93:345–359
  • Alexander HE, Redman W (1953) Transformation of type specificity of meningococci; change in heritable type induced by type-specific extracts containing desoxyribonucleic acid. J Exp Med 97:797–806
  • Aline RF Jr, Reznikoff WS (1975) Bacteriophage Mu-1-induced permeability mutants in Escherichia coli K-12. J Bacteriol 124:578–581
  • Ammann A, Neve H, Geis A, Heller KJ (2008) Plasmid transfer via transduction from Streptococcus thermophilus to Lactococcus lactis. J Bacteriol 190:3083–3087
  • Anderson TF, Wollman EL, Jacob F (1957) Processes of conjugation and recombination in Escherichia coli. III. Morphological aspects in electron microscopy. Ann Inst Pasteur 93:450–445
  • Ando T, Israel DA, Kusugami K, Blaser MJ (1999) HP0333, a member of the dprA family, is involved in natural transformation in Helicobacter pylori. J Bacteriol 181:5572–5580
  • Anthony KG, Kathir P, Moore D, Ippen-Ihler K, Frost LS (1996) Analysis of the traLEKBP sequence and the TraP protein from three F-like plasmids: F, R100-1 and ColB2. J Bacteriol 178:3194–3200
  • Armentrout RW, Rutberg L (1970) Mapping of prophage and mature deoxyribonucleic acid from temperate Bacillus bacteriophage phi 105 by marker rescue. J Virol 6:760–767
  • Arthur DC, Ghetu AF, Gubbins MJ, Edwards RA, Frost LS, Glover JN (2003) FinO is an RNA chaperone that facilitates sense-antisense RNA interactions. EMBO J 22:6346–6355
  • Arutyunov D, Frost LS (2013) F conjugation: back to the beginning. Plasmid 70:18–32
  • Arutyunov D, Arenson B, Manchak J, Frost LS (2010) F plasmid TraF and TraH are components of an outer membrane complex involved in conjugation. J Bacteriol 192:1730–1734
  • Attaiech L, Olivier A, Mortier-Barrière I, Soulet AL, Granadel C, Martin B, Polard P, Claverys JP (2011) Role of the single-stranded DNA-binding protein SsbB in pneumococcal transformation: maintenance of a reservoir for genetic plasticity. PLoS Genet 7:e1002156
  • Audette GF, Manchak J, Beatty P, Klimke WA, Frost LS (2007) Entry exclusion in F-like plasmids requires intact TraG in the donor that recognizes its cognate TraS in the recipient. Microbiology 153:442–451
  • Auer B, Schweiger M (1984) Evidence that Escherichia coli virus T1 induces a DNA methyltransferase. J Virol 49:588–590
  • Austrian R, Colowick MS (1953) Modification of the fermentative activities of Pneumococcus through transformation reactions. Bull Johns Hopkins Hosp 92:375–384
  • Austrian R, Macleod CM (1949) Acquisition of M protein by pneumococci through transformation reactions. J Exp Med 89:451–460
  • Austrian R, Bernheimer HP, Smith EE, Mills GT (1959) Simultaneous production of two capsular polysaccharides by pneumococcus. II. The genetic and biochemical bases of binary capsulation. J Exp Med 110:585–602
  • Avery OT, Heidelberger M (1923) Immunological relationships of cell constituents of Pneumococcus. J Exp Med 38:81–85
  • Avery OT, Heidelberger M, Goebel WF (1925) The soluble specific substance of Friedlander’s bacillus: paper II. Chemical and immunological relationships of Pneumococcus type II and of a strain of Friedlander’s bacillus. J Exp Med 42:709–725
  • Avery OT, Macleod CM, McCarty M (1944) Studies on the chemical nature of the substance inducing transformation of pneumococcal types: induction of transformation by a desoxyribonucleic acid fraction isolated from Pneumococcus type III. J Exp Med 79:137–158
  • Aziz RK, Edwards RA, Taylor WW, Low DE, McGeer A, Kotb M (2005) Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of Streptococcus pyogenes. J Bacteriol 187:3311–3318
  • Bachhuber M, Brill WJ, Howe MM (1976) Use of bacteriophage Mu to isolate deletions in the his-nif region of Klebsiella pneumoniae. J Bacteriol 128:749–753
  • Baltrus DA, Guillemin K (2006) Multiple phases of competence occur during the Helicobacter pylori growth cycle. FEMS Microbiol Lett 255:148–155
  • Balzer D, Pansegrau W, Lanka E (1994) Essential motifs of relaxase (TraI) and TraG proteins involved in conjugative transfer of plasmid RP4. J Bacteriol 176:4285–4295
  • Banks DJ, Beres SB, Musser JM (2002) The fundamental contribution of phages to GAS evolution, genome diversification and strain emergence. Trends Microbiol 10:515–521
  • Banks DJ, Porcella SF, Barbian KD, Beres SB, Philips LE, Voyich JM, DeLeo FR, Martin JM, Somerville GA, Musser JM (2004) Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. J Infect Dis 190:727–738
  • Bao Y, Liang Z, Booyjzsen C, Mayfield JA, Li Y, Lee SW, Ploplis VA, Song H, Castellino FJ (2014) Unique genomic arrangements in an invasive serotype M23 strain of Streptococcus pyogenes identify genes that induce hypervirulence. J Bacteriol 196:4089–4102
  • Barany F, Kahn ME (1985) Comparison of transformation mechanisms of Haemophilus parainfluenzae and Haemophilus influenzae. J Bacteriol 161:72–79
  • Baron LS, Carey WF, Spilman WM (1959) Genetic recombination between Escherichia coli and Salmonella typhimurium. Proc Natl Acad Sci USA 45:976–984
  • Bayer ME (1968) Adsorption of bacteriophages to adhesions between wall and membrane of Escherichia coli. J Virol 2:346–356
  • Beattie KL, Setlow JK (1970) Transformation between Haemophilus influenzae and Haemophilus parainfluenzae. J Bacteriol 104:390–400
  • Beck CM, Diner EJ, Kim JJ, Low DA, Hayes CS (2014) The F pilus mediates a novel pathway of CDI toxin import. Mol Microbiol 93:276–290
  • Bendig MM, Drexler H (1977) Transduction of bacteriophage Mu by bacteriophage T1. J Virol 22:640–645
  • Bergé M, Mortier-Barrière I, Martin B, Claverys JP (2003) Transformation of Streptococcus pneumoniae relies on DprA- and RecA-dependent protection of incoming DNA single strands. Mol Microbiol 50:527–536
  • Berndt C, Meier P, Wackernagel W (2003) DNA restriction is a barrier to natural transformation in Pseudomonas stutzeri JM300. Microbiology 149:895–901
  • Berry ME, McCarthy AM, Plough HH (1952) Transduction of multiple nutritional requirements in Salmonella typhimurium. Proc Natl Acad Sci USA 38:797–803
  • Beutin L, Achtman M (1979) Two Escherichia coli chromosomal cistrons, sfrA and sfrB, which are needed for expression of F factor tra functions. J Bacteriol 139:730–737
  • Biller SJ, Schubotz F, Roggensack SE, Thompson AW, Summons RE, Chisholm SW (2014) Bacterial vesicles in marine ecosystems. Science 343:183–186
  • Bingle LE, Zatyka M, Manzoor SE, Thomas CM (2003) Co-operative interactions control conjugative transfer of broad host-range plasmid RK2: full effect of minor changes in TrbA operator depends on KorB. Mol Microbiol 49:1095–1108
  • Birkeland NK, Holo H (1993) Transduction of a plasmid carrying the cohesive end region from Lactococcus lactis bacteriophage PhiLC3. Appl Environ Microbiol 59:1966–1968
  • Blaser MJ (1992) Hypotheses on the pathogenesis and natural history of Helicobacter pylori induced inflammation. Gastroenterology 102:720–727
  • Blenkiron, Simonov D, Muthukaruppan A, Tsai P, Dauros P, Green S, Hong J, Print CG, Swift S, Phillips AR (2016) Uropathogenic Escherichia coli releases extracellular vesicles that are associated with RNA. PLoS One 11(8):e0160440
  • Blesa A, Berenguer J (2015) Contribution of vesicle-protected extracellular DNA to horizontal gene transfer in Thermus spp. Int Microbiol 18:177–187
  • Boakes E, Kearns AM, Ganner M, Perry C, Hill RL, Ellington MJ (2011) Distinct bacteriophages encoding Panton-Valentine leukocidin (PVL) among international methicillin-resistant Staphylococcus aureus clones harboring PVL. J Clin Microbiol 49:684–692
  • Boice LB (1969) Evidence that Bacillus subtilis bacteriophage SP02 is temperate and heteroimmune to bacteriophage phi-105. J Virol 4:47–49
  • Bolotin A, Wincker P, Mauger S, Jaillon O, Malarme K, Weissenbach J, Ehrlich SD, Sorokin A (2001) The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res 11:731–753
  • Bonner D (1951) Gene-enzyme relationships in Neurospora. Cold Spring Harb Symp Quant Biol 16:143–158
  • Boram W, Abelson J (1973) Bacteriophage Mu integration: on the orientation of the prophage. Virology 54:102–108
  • Bouck N, Adelberg EA (1963) The relationship between DNA synthesis and conjugation in Escherichia coli. Biochem Biophys Res Commun 11:24–27
  • Boulter J, Lee N (1975) Isolation of specialized transducing bacteriophage lambda carrying genes of the L-arabinose operon of Escherichia coli B/r. J Bacteriol 123:1043–1054
  • Boyd JSK (1950) The symbiotic bacteriophages of Salmonella typhimurium. J Pathol Bacteriol 62:501–517
  • Boyd JSK (1951) Excessive dose phenomenon in virus infections. Nature 167:1061–1062
  • Boyd JSK, Parker MT, Mair NS (1951) Symbiotic bacteriophage as a ‘Marker’ in the identitication of strains of Salmonella typhimurium. J Hyg Camb 49:442–451
  • Bracco RM, Krauss MR, Roe AS, MacLeod CM (1957) Transformation reactions between pneumococcus and three strains of streptococci. J Exp Med 106:247–259
  • Bradshaw HD Jr, Traxler BA, Minkley EG Jr, Nester EW, Gordon MP (1990) Nucleotide sequence of the traI (helicase I) gene from the sex factor F. J Bacteriol 172:4127–4131
  • Braun V, Schaller K, Wolff H (1973) A common receptor protein for phage T5 and colicin M in the outer membrane of Escherichia coli B. Biochim Biophys Acta 323:87–97
  • Bray D, Robbins PW (1967) Mechanism of epsilon-15 conversion studies with bacteriphage mutants. J Mol Biol 30:457–475
  • Briers Y, Staubli T, Schmid MC, Wagner M, Schuppler M, Loessner MJ (2012) Intracellular vesicles as reproduction elements in cell wall-deficient L-form bacteria. PLoS One 7:e38514
  • Brody E, Coleman L, Mackal RP, Werninghaus B, Evans EA Jr (1964) Properties of infectious deoxyribonucleic acid from T1 and λ Bacteriophage. J Biol Chem 239:285–289
  • Brody EN, Mackal RP, Evans EA Jr (1967) Properties of infectious T1 deoxyribonucleic acid. J Virol 1:76–85
  • Broudy TB, Fischetti VA (2003) In vivo lysogenic conversion of Tox(-) Streptococcus pyogenes to Tox(+) with lysogenic streptococci or free phage. Infect Immun 71:3782–3786
  • Broudy TB, Pancholi V, Fischetti VA (2002) The in vitro interaction of Streptococcus pyogenes with human pharyngeal cells induces a phage-encoded extracellular DNase. Infect Immun 70:2805–2811
  • Bukhari AI, Zipser D (1972) Random insertion of Mu-1 DNA within a single gene. Nat New Biol 236:240–243
  • Busquets A, Peña A, Gomila M, Bosch R, Nogales B, García-Valdés E, Lalucat J, Bennasar A (2012) Genome sequence of Pseudomonas stutzeri strain JM300 (DSM 10701), a soil isolate and model organism for natural transformation. J Bacteriol 194:5477–5478
  • Cagle GD, Vela GR, Pfister RM (1972) Freeze-etching of Azotobacter vinelandii: examination of wall, exine, and vesicles. J Bacteriol 109:1191–1197
  • Calef E (1967) Mapping of integration and excision crossovers in superinfection double lysogens for phage lambda in Escherichia coli. Genetics 55:547–556
  • Campbell A (1963) Segregants from lysogenic heterogenotes carrying recombinant lambda prophages. Virology 20:344–356
  • Campbell AM (1992) Chromosomal insertion sites for phages and plasmids. J Bacteriol 174:7495–7499
  • Campbell A, Schneider SJ, Song B (1992) Lambdoid phages as elements of bacterial genomes (integrase/phage21/Escherichia coli K-12/icd gene). Genetica 86:259–267
  • Carlson CA, Pierson LS, Rosen JJ, Ingraham JL (1983) Pseudomonas stutzeri and related species undergo natural transformation. J Bacteriol 153:93–99
  • Caruso ML, Fucci L (1990) Histological identification of Helicobacter pylori in early and advanced gastric cancer. J Clin Gastroenterol 12:601–602
  • Caster JH, Postel EH, Goodgal SH (1970) Competence mutants: isolation of transformation deficient strains of Haemophilus influenzae. Nature (London) 227:515–517
  • Cavalli LL, Lederberg J, Lederberg EM (1953) An infective factor controlling sex compatibility in Bacterium coli. J Gen Microbiol 8:89–103
  • Cavalli-Sforza LL (1950) La sessualita nei batteri. Boll Ist Sieroter Milan 29:281–289
  • Chan RK, Botstein D (1976) Specialized transduction by bacteriophage P22 in Salmonella typhimurium: genetic and physical structure of the transducing genomes and the prophage attachment site. Genetics 83:433–458
  • Chandler MS (1992) The gene encoding cAMP receptor protein is required for competence development in Haemophilus influenzae Rd. Proc Natl Acad Sci USA 89:1626–1630
  • Chandler MS, Smith RA (1996) Characterization of the Haemophilus influenzae topA locus: DNA topoisomerase I is required for genetic competence. Gene 169:25–31
  • Chandry PS, Moore SC, Davidson BE, Hillier AJ (2002) Transduction of concatemeric plasmids containing cos site of Lactococcus lactis bacteriophage sk1. FEMS Microbiol Lett 216:85–90
  • Chang KC, Yeh YC, Lin TL, Wang JT (2001) Identification of genes associated with natural competence in Helicobacter pylori by transposon shuttle random mutagenesis. Biochem Biophys Res Commun 288:961–968
  • Charbit A, Gehring K, Nikaido H, Ferenci T, Hofnung M (1988) Maltose transport and starch binding in phage-resistant point mutants of maltoporin. Functional and topological implications. J Mol Biol 201:487–496
  • Chen I, Dubnau D (2004) DNA uptake during bacterial transformation. Nat Rev Microbiol 2:241–249
  • Chen J, Novick RP (2009) Phage-mediated intergeneric transfer of toxin genes. Science 323:139–141
  • Cho H, Winans SC (2007) TraA, TraC and TraD autorepress two divergent quorum-regulated promoters near the transfer origin of the Ti plasmid of Agrobacterium tumefaciens. Mol Microbiol 63:1769–1782
  • Choi JW, Um JH, Cho JH, Lee HJ (2017) Tiny RNAs and their voyage via extracellular vesicles: secretion of bacterial small RNA and eukaryotic microRNA. Exp Biol Med (Maywood) 242:1475–1481
  • Chow LT, Boice L, Davidson N (1972) Map of the partial sequence homology between DNA molecules of Bacillus subtilis bacteriophages SPO2 and phi105. J Mol Biol 68:391–400
  • Christensen JR, Geiman JM (1973) A new effect of the rex gene of phage lambda: premature lysis after infection by phage T1. Virology 56:285–290
  • Christensen JR, Gawron MC, Halpern J (1978) Exclusion of bacteriophage T1 by bacteriophage lambda. I. Early exclusion requires lambda N gene product and host factors involved in N gene expression. J Virol 25:527–534
  • Clark AJ (1963) Genetic analysis of a “double male” strain of Escherichia coli K-12. Genetics 48:105–120
  • Clark AJ, Adelberg EA (1962) Bacterial conjugation. Annu Rev Microbiol 16:289–319
  • Concino MF, Goodgal SH (1981) Haemophilus influenzae polypeptides involved in deoxyribonucleic acid uptake detected by cellular surface protein iodination. J Bacteriol 148:220–231
  • Concino MF, Goodgal SH (1982) DNA-binding vesicles released from the surface of a competence-deficient mutant of Haemophilus influenzae. J Bacteriol 152:441–450
  • Corbinais C, Mathieu A, Damke PP, Kortulewski T, Busso D, Prado-Acosta M, Radicella JP, Marsin S (2017) ComB proteins expression levels determine Helicobacter pylori competence capacity. Sci Rep 7:41495
  • Costa TR, Ilangovan A, Ukleja M, Redzej A, Santini JM, Smith TK, Egelman EH, Waksman G (2016) Structure of the bacterial sex F pilus reveals an assembly of a stoichiometric protein-phospholipid complex. Cell 166:1436–1444
  • Cress DE, Kline BC (1976) Isolation and characterization of Escherichia coli chromosomal mutants affecting plasmid copy number. J Bacteriol 125:635–642
  • Croft S, Walsh J, Lloyd W, Russell-Jones GJ (1991) TraT: a powerful carrier molecule for the stimulation of immune responses to protein and peptide antigens. J Immunol 146:793–798
  • Cuozzo M, Silverman PM (1986) Characterization of the F plasmid TraJ protein synthesized in F′ and Hfr strains of Escherichia coli K-12. J Biol Chem 261:5175–5179
  • D’Herelle F (1917) On an invisible microbe antagonistic toward dysenteric bacilli. C R Acad Sci 165:373–375
  • Danner DB, Deich RA, Sisco KL, Smith HO (1980) An eleven-base-pair sequence determines the specificity of DNA uptake in Haemophilus transformation. Gene 11:311–318
  • Danner DB, Smith HO, Narang SA (1982) Construction of DNA recognition sites active in Haemophilus transformation. Proc Natl Acad Sci USA 79:2393–2397
  • Davidson BE, Powell IB, Hillier AJ (1990) Temperate bacteriophages and lysogeny in lactic acid bacteria. FEMS Microbiol Rev 87:79–90
  • Dawson MH (1928) The interconvertibility of “R” and “S” forms of pneumococcus. J Exp Med 47:577–591
  • Dawson MH (1930) The transformation of pneumococcal types: II. The interconvertibility of type-specific S. pneumococci. J Exp Med 51:123–147
  • de Vos WM (2011) Systems solutions by lactic acid bacteria: from paradigms to practice. Microb Cell Fact 10:S2
  • de Vries J, Meier P, Wackernagel W (2001) The natural transformation of the soil bacteria Pseudomonas stutzeri and Acinetobacter sp. by transgenic plant DNA strictly depends on homologous sequences in the recipient cells. FEMS Microbiol Lett 195:211–215
  • Dean DH, Orrego JC, Hutchinson KW, Halvorson HO (1976) New temperate bacteriophage for Bacillus subtilis: Rho1 1. J Virol 29:509–519
  • Deich RA, Smith HO (1980) Mechanism of homospecific DNA uptake in Haemophilus influenzae transformation. Mol Gen Genet 177:369–374
  • Delbrück M (1945) The burst size distribution in the growth of bacterial viruses (bacteriophages). J Bacteriol 50:131–135
  • Denney RM, Yanofsky C (1974) Isolation and characterization of specialized φ80 transducing phages carrying regions of the Salmonella typhimurium trp operon. J Bacteriol 118:505–513
  • Dennison S (1972) Naturally occurring R factor, derepressed for pilus synthesis, belonging to the same compatibility group as the sex factor F of Escherichia coli K-12. J Bacteriol 109:416–422
  • Deutsch A (1962) New fermentation reactions by Streptococcus viridans stimulated by transformation with pneumococcal deoxyribonucleic acid. Nature 194:375–376
  • Dick GF, Dick GH (1924) A skin test for susceptibility to scarlet fever. JAMA 82:265–266
  • Dinges MM, Orwin PM, Schlievert PM (2000) Exotoxins of Staphylococcus aureus. Clin Microbiol Rev 13:16–34
  • Doran TJ, Loh SM, Firth N, Skurray RA (1994) Molecular analysis of the F plasmid traVR region: traV encodes a lipoprotein. J Bacteriol 176:4182–4186
  • Dorer MS, Fero J, Salama NR (2010) DNA damage triggers genetic exchange in Helicobacter pylori. PLoS Pathog 6:e1001026
  • Dorer MS, Cohen IE, Sessler TH, Fero J, Salama NR (2013) Natural competence promotes Helicobacter pylori chronic infection. Infect Immun 81:209–215
  • Dostál L, Schildbach JF (2010) Single-stranded DNA binding by F TraI relaxase and helicase domains is coordinately regulated. J Bacteriol 192:3620–3628
  • Drexler H (1970) Transduction by bacteriophage T1. Proc Natl Acad Sci USA 66:1083–1088
  • Drexler H (1977) Specialized transduction of the biotin region of Escherichia coli by phage T1. Mol Gen Genet 152:59–63
  • Drexler H, Christensen JR (1979) Transduction of bacteriophage lambda by bacteriophage T1. J Virol 30:543–550
  • Drexler H, Kylberg KJ (1975) Effect of UV irradiation on transduction by coliphage T1. J Virol 16:263–266
  • Dubnau DA (1982) The molecular biology of the bacilli, Bacillus subtilis, vol 1. Academic, New York
  • Dubois A, Fiala N, Hemanackah LM, Drazek ES, Tarnawski A, Fishbein WN, Perez-Perez GI, Blaser MJ (1994) Natural gastric infection with Helicobacter pylori in monkeys: a model for spiral bacteria infection in humans. Gastroenterology 106:1405–1417
  • Duval CW, Couret M (1912) A further note upon the experimental production of leprosy in the monkey (Macacus rhesus) with a critical study of the culture employed. J Exp Med 15:292–306
  • Dwivedi GR, Sharma E, Rao DN (2013) Helicobacter pylori DprA alleviates restriction barrier for incoming DNA. Nucleic Acids Res 41:3274–3288
  • Dyer DW, Rock MI, Lee CY, Iandolo JJ (1985) Generation of transducing particles in Staphylococcus aureus. J Bacteriol 161:91–95
  • Enomoto M (1967) Composition of chromosome fragments participating in phage P22-mediated transduction of Salmonella typhimurium. Virology 33:474–482
  • Ephrussi-Taylor H, Freed BA (1964) Incorporation of thymidine and amino acids into deoxyribonucleic acid and acid-insoluble cell structures in pneumococcal cultures synchronized for competence to transform. J Bacteriol 87:1211–1215
  • Eriksson U, Svenson SB, Lönngren J, Lindberg AA (1979) Salmonella phage glycanases: substrate specificity of the phage P22 endo-rhamnosidase. J Gen Virol 43:503–551
  • Erni B, Zanolari B, Kocher HP (1987) The mannose permease of Escherichia coli consists of three different proteins. Amino acid sequence and function in sugar transport, sugar phosphorylation, and penetration of phage lambda DNA. J Biol Chem 262:5238–5247
  • Evans AC (1936) Studies on hemolytic streptococci: II. Streptococcus pyogenes. J Bacteriol 31:611–624
  • Everett R, Willetts N (1980) Characterization of an in vivo system for nicking at the origin of conjugal DNA transfer of the sex factor F. J Mol Biol 136:129–150
  • Faelen M, Toussaint A (1976) Bacteriophage Mu-1: a tool to transpose and to localize bacterial genes. J Mol Biol 104:525539
  • Faelen M, Mergeay M, Gerits J, Toussaint A, Lefèbvre N (1981) Genetic mapping of a mutation conferring sensitivity to bacteriophage Mu in Salmonella typhimurium LT2. J Bacteriol 146:914–919
  • Falkinham JO, Clark AJ (1974) Genetic analysis of a double male strain of Escherichia coli K12. Genetics 78:633–644
  • Feijoo-Siota L, Rama JLR, Sánchez-Pérez A, Villa TG (2017) Considerations on bacterial nucleoids. Appl Microbiol Biotechnol 101:5591–5602
  • Feinstein SI, Low KB (1986) Hyper-recombining recipient strains in bacterial conjugation. Genetics 113:13–33
  • Feller AE, Stevens DA (1952) Sheep blood agar for the isolation of Lancefield groups of beta-hemolytic streptococci. J Lab Clin Med 39:484–491
  • Feng Y, Chen CJ, Su LH, Hu S, Yu J, Chiu CH (2008) Evolution and pathogenesis of Staphylococcus aureus: lessons learned from genotyping and comparative genomics. FEMS Microbiol Rev 32:23–37
  • Fercher C, Probst I, Kohler V, Goessweiner-Mohr N, Arends K, Grohmann E, Zangger K, Meyer NH, Keller W (2016) VirB8-like protein TraH is crucial for DNA transfer in Enterococcus faecalis. Sci Rep 6:24643
  • Fernandes RM, De Lencastre H, Archer LJ (1986) Three new temperate phages of Bacillus subtilis. J Gen Microbiol 132:661–668
  • Fernandes RM, de Lencastre H, Archer LJ (1989) Specialized transduction in Bacillus subtilis by the phages IG1, IG3, and IG4. Arch Virol 105:137–140
  • Fernandez-Lopez R, de Toro M, Moncalian G, Garcillan-Barcia MP, de la Cruz F (2016) Comparative genomics of the conjugation region of F-like plasmids: five shades of F. Front Mol Biosci 3:71. (eCollection 2016)
  • Fink PS, Zahler SA (1982) Specialized transduction of the ilvD-thyB-ilvA region mediated by Bacillus subtilis bacteriophage SP beta. J Bacteriol 150:1274–1279
  • Finlay BB, Paranchych W (1986) Nucleotide sequence of the surface exclusion genes traS and traT from the IncF0 lac plasmid pED208. J Bacteriol 166:713–721
  • Firth N, Skurray R (1992) Characterization of the F plasmid bifunctional conjugation gene, traG. Mol Gen Genet 232:145–153
  • Fischetti VA, Pancholi V, Schneewind O (1990) Conservation of a pentapeptide sequence in the anchor region of surface proteins from gram-positive cocci. Mol Microbiol 4:1603–1605
  • Fitzgerald GF, Gasson MJ (1988) In vivo gene transfer systems and transposons. Biochimie 70:489–502
  • Folli C, Mangiarotti L, Folloni S, Alfieri B, Gobbo M, Berni R, Rivetti C (2008) Specificity of the TraA-DNA interaction in the regulation of the pPD1-encoded sex pheromone response in Enterococcus faecalis. J Mol Biol 380:932–945
  • Fox MS (1962) The fate of transforming deoxyribonucleate following fixation by transformable bacteria III. Proc Natl Acad Sci USA 48:1043–1048
  • Fox MS, Allen MK (1964) On the mechanism of deoxyribonucleate integration in pneumococcal transformation. Proc Natl Acad Sci USA 52:412–419
  • Fox MS, Hotchkiss RD (1960) Fate of transforming deoxyribonucleate following fixation by transformable bacteria. Nature 187:1002–1006
  • Franklin N (1971) In: Hershey AD (ed) The bacteriophage lambda. Cold Spring Harbor Laboratory, New York, pp 175–194
  • Freeman VJ (1951) Studies on the virulence of bacteriophage-infected strains of Corynebacterium diphtheriae. J Bacteriol 61:675–688
  • Freeman VJ, Morse IU (1952) Further observations on the change to virulence of bacteriophage infected avirulent strains of Corynebacterium diphtheriae. J Bacteriol 63:407–414
  • Friesen JD, Parker J, Watson RJ, Fiil NP, Pedersen S (1976) Isolation of transducing phage carrying rps T, the structural gene for ribosomal protein S20. Mol Gen Genet 144:115–118
  • Frobisher M Jr, Brown JH (1927) Transmissible toxicogenicity of streptococci. Bull Johns Hopkins Hosp 41:167–173
  • Frost LS, Paranchych W, Willetts NS (1984) DNA sequence of the F traALE region that includes the gene for F pilin. J Bacteriol 160:395–401
  • Frost LA, Ippen-IhleK, Skurray RA (1994) Analysis of the sequence and gene products of the transfer region of the F sex factor. Microbiol Rev 58:162–210
  • Fuerst JA (2005) Intracellular compartmentation in Planctomycetes. Annu Rev Microbiol 59:299–328
  • Garcia E, Lopez P, Ureña MT, Espinosa M (1978) Early stages in Bacillus subtilis transformation: association between homologous DNA and surface structures. J Bacteriol 135:731–740
  • Ghei OK, Lacks SA (1967) Recovery of donor deoxyribonucleic acid marker activity from eclipse in pneumococcal transformation. J Bacteriol 93:816–829
  • Goodgal SH (1961) Studies on transformations of Hemophilus influenzae. IV. Linked and unlinked transformations. J Gen Physiol 45:205–228
  • Goodgal SH, Herriott RM (1961a) Studies on transformations of Hemophilus influenzae. I Competence. J Gen Physiol 44:1201–1227
  • Goodgal SH, Herriott RM (1961b) Studies on transformations of Hemophilus influenzae. II. The molecular weight of transforming DNA by sedimentation and diffusion measurements. J Gen Physiol 44:1229–1239
  • Goodgal SH, Mitchell M (1984) Uptake of heterologous DNA by Haemophilus influenzae. J Bacteriol 157:785–788
  • Gowen JW, Lincoln RE (1942) A test for sexual fusion in bacteria. J Bacteriol 44:551–554
  • Grace ED, Gopalkrishnan S, Girard ME, Blankschien MD, Ross W, Gourse RL, Herman C (2015) Activation of the σE-dependent stress pathway by conjugative TraR may anticipate conjugational stress. J Bacteriol 197:924–931
  • Graupner S, Wackernagel W (2001) Identification and characterization of novel competence genes comA and exbB involved in natural genetic transformation of Pseudomonas stutzeri. Res Microbiol 152:451–460
  • Graupner S, Frey V, Hashemi R, Lorenz MG, Brandes G, Wackernagel W (2000) Type IV pilus genes pilA and pilC of Pseudomonas stutzeri are required for natural genetic transformation, and pilA can be replaced by corresponding genes from nontransformable species. J Bacteriol 182:2184–2190
  • Graupner S, Weger N, Sohni M, Wackernagel W (2001) Requirement of novel competence genes pilT and pilU of Pseudomonas stutzeri for natural transformation and suppression of pilT deficiency by a hexahistidine tag on the type IV pilus protein PilAI. J Bacteriol 183:4694–4701
  • Graves JF, Biswas GD, Sparling PF (1982) Sequence-specific DNA uptake in transformation of Neisseria gonorrhoeae. J Bacteriol 152:1071–1077
  • Griffith F (1928) The significance of pneumococcal types. J Hyg (Lond) 27:113–159
  • Grohmann E, Muth G, Espinosa M (2003) Conjugative plasmid transfer in gram-positive bacteria. Microbiol Mol Biol Rev 67:277–301
  • Gromkova R, Goodgal SH (1972) Action of Haemophilus endodeoxyribonuclease on biologically active deoxyribonucleic acid. J Bacteriol 109:987–992
  • Gubbins MJ, Lau I, Will WR, Manchak JM, Raivio TL, Frost LS (2002) The positive regulator, TraJ, of the Escherichia coli F plasmid is unstable in a cpxA background. J Bacteriol 184:5781–5788
  • Guglielmini J, Quintais L, Garcillán-Barcia MP, de la Cruz F, Rocha EP (2011) The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet 7:e1002222
  • Guild WR, Robinson M (1963) Evidence for message reading from a unique strand of pneumococcal DNA. Proc Natl Acad Sci USA 50:106–112
  • Gunther JK, Goodgal SH (1970) An exonuclease specific for double stranded deoxyribonucleic acid. J Biol Chem 245:5341–5349
  • Guogas LM, Kennedy SA, Lee JH, Redinbo MR (2009) A novel fold in the TraI relaxase-helicase C-terminal domain is essential for conjugative DNA transfer. J Mol Biol 386:554–568
  • Gurney T, Fox MS (1968) Physical and genetic hybrids formed in bacterial transformation. J Mol Biol 32:83–100
  • Gwinn ML, Ramanathan R, Smith HO, Tomb JF (1998) A new transformation-deficient mutant of Haemophilus influenzae Rd with normal DNA uptake. J Bacteriol 180:746–748
  • Habier J, May P, Heintz-Buschart A, Ghosal A, Wienecke-Baldacchino AK, Nolte-’t Hoen ENM, Wilmes P, Fritz JV (2018) Extraction and analysis of RNA isolated from pure bacteria-derived outer membrane vesicles. Methods Mol Biol 1737:213–230
  • Ham LM, Firth N, Skurray R (1989) Nucleotide sequence of the F plasmid transfer gene, traH: identification of a new gene and a promoter within the transfer operon. Gene 75:157–165
  • Hansen FG, von Meyenburg K (1979) Characterization of the dnaA, gyrB and other genes in the dnaA region of the Escherichia coli chromosome on specialized transducing phages lambda-tna. Mol Gen Genet 175:135–144
  • Hansen FG, Nielsen J, Riise E, von Meyenburg K (1981) The genes for the eight subunits of the membrane bound ATP synthase of Escherichia coli. Mol Gen Genet 183:463–472
  • Harada K, Kameda M, Suzuki M, Mitsuhashi S (1963) Drug resistance of enteric bacteria. II. Transduction of transmissible drug-resistance (R) factors with phage epsilon. J Bacteriol 86:1332–1338
  • Harada K, Kameda M, Suzuki M, Mitsuhashi S (1964) Drug resistance of enteric bacteria. 3. Acquisition of transferability of nontransmissible R(TC) factor in cooperation with F factor and formation of FR(TC). J Bacteriol 88:1257–1265
  • Harris RL, Silverman PM (2004) Tra proteins characteristic of F-like type IV secretion systems constitute an interaction group by yeast two-hybrid analysis. J Bacteriol 186:5480–5485
  • Hashimoto K (1957) Further studies on the transformation of streptomycin resistance in pneumococci. Jpn J Microbiol 1:1–9
  • Havekes LM, Lugtenberg BJ, Hoekstra WP (1976) Conjugation deficient E. coli K12 F- mutants with heptose-less lipopolysaccharide. Mol Gen Genet 146:43–50
  • Hayes W (1953a) The mechanism of genetic recombination in Escherichia coli. Cold Spring Harb Symp Quant Biol 18:75–93
  • Hayes W (1953b) Observations on a transmissible agent determining sexual differentiation in Bacterium coli. J Gen Microbiol 8:72–88
  • Hedges RW (1971) Transduction mechanisms of bacteriophage ε15 I. General properties of the system. Genet Res 18:9–19
  • Hedges AJ (1974) R factors from Proteus mirabilis and P. vulgaris. J Gen Microbiol 87:301–311
  • Heidelberger M, Avery OT (1923) The soluble specific substance of pneumococcus. J Exp Med 38:73–79
  • Hellstern S, Mutzel R (2016) Purification of F plasmid-encoded native TraC from Escherichia coli by affinity chromatography on calmodulin Sepharose. Protein Expr Purif 122:97–104
  • Hemmis CW, Berkmen M, Eser M, Schildbach JF (2011) TrbB from conjugative plasmid F is a structurally distinct disulfide isomerase that requires DsbD for redox state maintenance. J Bacteriol 193:4588–4597
  • Hemmis CW, Wright NT, Majumdar A, Schildbach JF (2014) Chemical shift assignments of a reduced N-terminal truncation mutant of the disulfide bond isomerase TrbB from plasmid F, TrbBΔ29. Biomol NMR Assign 8:435–438
  • Hennecke H, Springer M, Böck A (1977) A specialized transducing lambda phage carrying the Escherichia coli genes for phenylalanyl-tRNA synthetase. Mol Gen Genet 152:205–210
  • Herriott RM, Meyer EM, Vogt M (1970) Defined nongrowth media for stage II development of competence in Haemophilus influenzae. J Bacteriol 101:517–524
  • Hill JE, Wannamaker LW (1981) Identification of a lysin associated with a bacteriophage (A25) virulent for group A streptococci. J Bacteriol 145:696–703
  • Hiraga S (1976) Novel F prime factors able to replicate in Escherichia coli Hfr strains. Proc Natl Acad Sci USA 73:198–202
  • Hiraga S, Saitoh T (1975) F deoxyribonucleic acid transferred to recipient cells in the presence of rifampin. J Bacteriol 121:1000–1006
  • Hirota Y (1956) Artificial elimination of the F factor in Bact. coli K-12. Nature 178:92
  • Hirota Y, Lijima T (1957) Acriflavine as an effective agent for eliminating F-factor in Escherichia coli K-12. Nature 180:655–656
  • Hodgson DA (2000) Generalized transduction of serotype 1/2 and serotype 4b strains of Listeria monocytogenes. Mol Microbiol 35:312–323
  • Hofreuter D, Odenbreit S, Henke G, Haas R (1998) Natural competence for DNA transformation in Helicobacter pylori: identification and genetic characterization of the comB locus. Mol Microbiol 28:1027–1038
  • Hofreuter D, Odenbreit S, Haas R (2001) Natural transformation competence in Helicobacter pylori is mediated by the basic components of a type IV secretion system. Mol Microbiol 41:379–391
  • Hofreuter D, Karnholz A, Haas R (2003) Topology and membrane interaction of Helicobacter pylori ComB proteins involved in natural transformation competence. Int J Med Microbiol 293:153–165
  • Holden MT, Heather Z, Paillot R, Steward KF, Webb K, Ainslie F, Jourdan T, Bason NC, Holroyd NE, Mungall K, Quail MA, Sanders M, Simmonds M, Willey D, Brooks K, Aanensen DM, Spratt BG, Jolley KA, Maiden MC, Kehoe M, Chanter N, Bentley SD, Robinson C, Maskell DJ, Parkhill J, Waller AS (2009) Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. PLoS Pathog 5:e1000346
  • Holloway BW (1955) Genetic recombination in Pseudomonas aeruginosa. J Gen Microbiol 13:572–581
  • Holloway BW (1956) Self-fertility in Pseudomonas aeruginosa. J Gen Microbiol 15:221–224
  • Holloway BW, Fargie B (1960) Fertility factors and genetic linkage in Pseudomonas aeruginosa. J Bacteriol 80:362–368
  • Holloway BW, Jennings PA (1958) An infectious fertility factor for Pseudomonas aeruginosa. Nature 181:855–856
  • Hui FM, Zhou L, Morrison DA (1995) Competence for genetic transformation in Streptococcus pneumoniae: organization of a regulatory locus with homology to two lactococcin A secretion genes. Gene 153:25–31
  • Humbert O, Dorer MS, Salama NR (2011) Characterization of Helicobacter pylori factors that control transformation frequency and integration length during inter-strain DNA recombination. Mol Microbiol 79:387–401
  • Hyder SL, Streitfeld M (1978) Transfer of erythromycin resistance from clinically isolated lysogenic strains of Streptococcus pyogenes via their endogenous phage. J Infect Dis 138:281–286
  • Ikeda H, Tomizawa J (1968) Prophage P1, and extrachromosomal replication unit. Cold Spring Harb Symp Quant Biol 33:791–798
  • Ikeuchi T, Kudoh J, Kurahashi K (1985) Genetic analysis of spo0A and spo0C mutants of Bacillus subtilis with a phi 105 prophage merodiploid system. J Bacteriol 163(2):411–416
  • Ilangovan A, Kay CWM, Roier S, El Mkami H, Salvadori E, Zechner EL, Zanetti G, Waksman G (2017) Cryo-EM Structure of a relaxase reveals the molecular basis of DNA unwinding during bacterial conjugation. Cell 169:708–721
  • Inoko H, Imai M (1976) Isolation and genetic characterization of the nitA mutants of Escherichia coli affecting the termination factor rho. Mol Gen Genet 143:211–221
  • Inselburg JW, Eremenko-volpe T, Greenwald L, Maedow WL, Marmur J (1969) Physical and genetic mapping of the SP02 prophage on the chromosome of Bacillus subtilis 168. J Virol 3:624–628
  • Jacob F, Wollman EL (1956) Processes of conjugation and recombination in Escherichia coli. I. Induction by conjugation or zygotic induction. Ann Inst Pasteur 91:486–510
  • Jacob F, Wollman EL (1958a) Process of conjugation & genetic recombination in Escherichia coli. IV. Inducible prophages & measurement of the genetic segments transferred during conjugation. Ann Inst Pasteur 95:497–519
  • Jacob F, Wollman EL (1958b) Episomes, a proposed term for added genetic elements. C R Hebd Seances Acad Sci 247:154–156
  • Jacob F, Wollman EL (1961) Sexuality and the genetics of bacteria. Academic, New York
  • Jalajakumari MB, Manning PA (1989) Nucleotide sequence of the traD region in the Escherichia coli F sex factor. Gene 81:195–202
  • Jarolmen H, Bondi A, Crowell RL (1965) Transduction of Staphylococcus aureus to tetracycline resistance in vivo. J Bacteriol 89:1286–1290
  • Jerome LJ, van Biesen T, Frost LS (1999) Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E. J Mol Biol 285:1457–1473
  • Jha C, Ghosh S, Gautam V, Malhotra P, Ray P (2017) In vitro study of virulence potential of Acinetobacter baumannii outer membrane vesicles. Microb Pathog 111:218–224
  • Johnson EM, Falkow S, Baron LS (1964) Chromosome transfer kinetics of Salmonella Hfr strains. J Bacteriol 88:395–400
  • Johnson JR, Greene RC, Krueger JH (1977) Isolation and characterization of specialized lambda transducing bacteriophage carrying the metBJF methionine gene cluster. J Bacteriol 131:795–800
  • Johnson TJ, Danzeisen JL, Youmans B, Case K, Llop K, Munoz-Aguayo J, Flores-Figueroa C, Aziz M, Stoesser N, Sokurenko E, Price LB, Johnson JR (2016) Separate F-type plasmids have shaped the evolution of the H30 subclone of Escherichia coli sequence type 131. mSphere 1(4):e00121–e00116
  • Johnston C, Martin B, Granadel C, Polard P, Claverys JP (2013) Programmed protection of foreign DNA from restriction allows pathogenicity island exchange during pneumococcal transformation. PLoS Pathog 9:e1003178
  • Jones KE, Wetzler TF, Kenny GE (1981) T1 bacteriophage as an indicator for decontamination of laminar-flow biological safety cabinets. Appl Environ Microbiol 41:1072–1073
  • Kahn M, Concino M, Gromkova R, Goodgal S (1979) DNA binding activity of vesicles produced by competence deficient mutants of Haemophilus. Biochem Biophys Res Commun 87:764–772
  • Kahn ME, Maul G, Goodgal SH (1982) Possible mechanism for donor DNA binding and transport in Haemophilus. Proc Natl Acad Sci USA 79:6370–6374
  • Kahn ME, Barany F, Smith HO (1983) Transformasomes: specialized membranous structures that protect DNA during Haemophilus transformation. Proc Natl Acad Sci USA 80:6927–6931
  • Kameda M, Harada K, Suzuki M, Mitsuhashi S (1965) Drug resistance of enteric bacteria. V. High frequency of transduction of R factors with bacteriophage epsilon. J Bacteriol 90:1174–1181
  • Kaneko J, Kimura T, Narita S, Tomita T, Kamio Y (1998) Complete nucleotide sequence and molecular characterization of the temperate staphylococcal bacteriophage phiPVL carrying Panton-Valentine leukocidin genes. Gene 215:57–67
  • Kanemoto K, Tanaka S, Miyashita T, Matsushiro A (1986) Identification and purification of the N gene product of bacteriophage φ 80. Mol Gen Genet 205:523–529
  • Karudapuram S, Barcak GJ (1997) The Haemophilus influenzae dprABC genes constitute a competence-inducible operon that requires the product of the tfoX (sxy) gene for transcriptional activation. J Bacteriol 179:4815–4820
  • Karudapuram S, Zhao X, Barcak GJ (1995) DNA sequence and characterization of Haemophilus influenzae dprA+, a gene required for chromosomal but not plasmid DNA transformation. J Bacteriol 177:3235–3240
  • Kashiwagi A, Kitamura H, Sano Tsushima F (2015) Characterization of a single mutation in TraQ in a strain of Escherichia coli partially resistant to Qβ infection. Front Microbiol 6:124
  • Kathir P, Ippen-Ihler K (1991) Construction and characterization of derivatives carrying insertion mutations in F plasmid transfer region genes, trbA, artA, traQ, and trbB. Plasmid 26:40–54
  • Kauffmann F (1953) On the transduction of serological properties in the Salmonella group. Acta Pathol Microbiol Scand 33:409–420
  • Kawamura F, Saito H, Ikeda Y (1979) A method for construction of specialized transducing phage rho 11 of Bacillus subtilis. Gene 5:87–91
  • Kehoe M, Timmis KN (1984) Cloning and expression in Escherichia coli of the streptolysin O determinant from Streptococcus pyogenes: characterization of the cloned streptolysin O determinant and demonstration of the absence of substantial homology with determinants of other thiol-activated toxins. Infect Immun 43:804–810
  • Keweloh H, Bakker EP (1984) Permeability changes in the cytoplasmic membrane of Escherichia coli K-12 early after infection with bacteriophage T1. J Bacteriol 160:347–353
  • Khan NC, Sen SP (1967) Genetic transformation in Pseudomonas. J Gen Microbiol 49:201–209
  • Khan NC, Sen SP (1974) Further observations on genetic transformation in Pseudomonas. Microbiology 83:251–259
  • Kirschbaum JB (1973) Regulation of subunit synthesis of Escherichia coli RNA polymerase. Proc Natl Acad Sci USA 70:2651–2655
  • Klaenhammer TR, McKay LL (1976) Isolation and examination of transducing bacteriophage particles from Streptococcus lactis C2. J Dairy Sci 59:396–404
  • Klimke WA, Frost LS (1998) Genetic analysis of the role of the transfer gene, traN, of the F and R100-1 plasmids in mating pair stabilization during conjugation. J Bacteriol 180:4036–4043
  • Kline BC, Miller JR (1975) Detection of nonintegrated plasmid deoxyribonucleic acid in the folded chromosome of Escherichia coli: physicochemical approach to studying the unit of segregation. J Bacteriol 121:165–172
  • Klumpp J, Loessner MJ (2013) Listeria phages. Genomes, evolution, and application. Bacteriophage 3:e26861
  • Kolling GL, Matthews KR (1999) Export of virulence genes and Shiga toxin by membrane vesicles of Escherichia coli O157:H7. Appl Environ Microbiol 65:1843–1848
  • Konícek J, Konícková-Radochová M (1975) Possibilities of the conjugation process in mycobacteria. Folia Microbiol (Praha) 20:382–388
  • Krause RM (1957) Studies on bacteriophages of hemolytic streptococci. I. Factors influencing the interaction of phage and susceptible host cell. J Exp Med 106:356–384
  • Krause RM (2002) A half-century of streptococcal research: then & now. Indian J Med Res 115:215–241
  • Kroll JS, Loynds BM, Langford PR (1992) Palindromic Haemophilus DNA uptake sequences in presumed transcriptional terminators from H. influenzae and H. parainfluenzae. Gene 114:151–152
  • Kroll JS, Wilks KE, Farrant JL, Langford PR (1998) Natural genetic exchange between Haemophilus and Neisseria: intergeneric transfer of chromosomal genes between major human pathogens. Proc Natl Acad Sci USA 95:12381–12385
  • Kuipers EJ, Israel DA, Kusters JG, Blaser MJ (1998) Evidence for a conjugation-like mechanism of DNA transfer in Helicobacter pylori. J Bacteriol 180:2901–2905
  • Kurenbach B, Kopeć J, Mägdefrau M, Andreas K, Keller W, Bohn C, Abajy MY, Grohmann E (2006) The TraA relaxase autoregulates the putative type IV secretion-like system encoded by the broad-host-range Streptococcus agalactiae plasmid pIP501. Microbiology 152:637–645
  • Kusters JG, van Vliet AH, Kuipers EJ (2006) Pathogenesis of Helicobacter pylori infection. Clin Microbiol Rev 19:449–490
  • Kuwabara S, Akiba T, Koyama K, Arai T (1963) Transmission of multiple drug-resistance from Shigella flexneri to Vibrio comma through conjugation. Jpn J Microbiol 7:61–67
  • Kylberg KJ, Bendig MM, Drexler H (1975) Characterization of transduction by bacteriophage T1: time of production and density of transducing particles. J Virol 16:854–858
  • Labrie SJ, Samson JE, Moineau S (2010) Bacteriophage resistance mechanisms. Nat Rev Microbiol 8:317–327
  • Lacks S (1962) Molecular fate of DNA in genetic transformation of Pneumococcus. J Mol Biol 5:119–131
  • Lacks S, Hotchkiss RD (1960) Formation of amylomaltase after genetic transformation of pneumococcus. Biochim Biophys Acta 45:155–163
  • Lacks S, Greenberg B, Carlson K (1967) Fate of donor DNA in pneumococcal transformation. J Mol Biol 29:327–347
  • Lacks S, Greenberg B, Neuberger M (1975) Identification of a deoxyribonuclease implicated in genetic transformation of Diplococcus pneumoniae. J Bacteriol 123:222–232
  • Lagoni OR, von Meyenburg K, Michelsen O (1993) Limited differential mRNA inactivation in the atp (unc) operon of Escherichia coli. J Bacteriol 175:5791–5797
  • Laine S, Moore D, Kathir P, Ippen-Ihler K (1985) Genes and gene products involved in the synthesis of F-pili. Basic Life Sci 30:535–553
  • Larson TG, Goodgal SH (1991) Sequence and transcriptional regulation of com101A, a locus required for genetic transformation in Haemophilus influenzae. J Bacteriol 173:4683–4691
  • Larson TG, Goodgal SH (1992) Donor DNA processing is blocked by a mutation in the com101A locus of Haemophilus influenzae. J Bacteriol 174:3392–3394
  • Lawn AM, Meynell E (1970) Serotypes of sex pili. J Hyg (Camb) 68:683–694
  • Le Minor L (1965) Antigenic conversions in Salmonella. V. Acquisition of factors 15 and 34 by Salmonella of D2 subgroup under the influence of lysogenization by epsilon 15 and epsilon 34 phages. Ann Inst Pasteur 109:35–46
  • LeClerc JE, Setlow JK (1975) Single-strand regions in the deoxyribonucleic acid of competent Haemophilus influenzae. J Bacteriol 122:1091–1102
  • Lederberg E (1950) Lysogenicity in Escherichia coli strain K-12. Microb Genet Bull 1:5–8
  • Lederberg EM (1952) Allelic relationships and reverse mutation in Escherichia coli. Genetics 37:469–483
  • Lederberg J, Tatum EL (1946) Gene recombination in E. coli. Nature 158:558
  • Lederberg J, Zinder N (1948) Concentration of biochemical mutants of bacteria with penicillin. J Am Chem Soc 70:4267
  • Lederberg J, Lederberg EM, Zinder ND, Lively ER (1951) Recombination analysis of bacterial heredity. Cold Spring Harb Symp Quant Biol 16:413–443
  • Lederberg J, Cavalli LL, Lederberg EM (1952) Sex compatibility in Escherichia coli. Genetics 37:720–730
  • Lefebvre FA, Lécuyer E (2017) Small luggage for a long journey: transfer of vesicle-enclosed small RNA in interspecies communication. Front Microbiol 8:377
  • Leidy G, Hahn E, Alexander HE (1959) Interspecific transformation in Hemophilus: a possible index of relationship between H. influenzae and H. aegyptius. Proc Soc Exp Biol Med 102:86–88
  • Leonard CG, Colón AE, Cole RM (1968) Transduction in group A streptococcus. Biochem Biophys Res Commun 30:130–135
  • Leong JM, Nunes-Düby S, Lesser CF, Youderian P, Susskind MM, Landy A (1985) The phi 80 and P22 attachment sites. Primary structure and interaction with Escherichia coli integration host factor. J Biol Chem 260:4468–4477
  • Leverentz B, Conway WS, Janisiewicz W, Camp MJ (2004) Optimizing concentration and timing of a phage spray application to reduce Listeria monocytogenes on honeydew melon tissue. J Food Prot 67:1682–1686
  • Lewis EB (1951) Pseudoallelism and gene evolution. Cold Spring Harb Symp Quant Biol 16:159–174
  • Li PL, Hwang I, Miyagi H, True H, Farrand SK (1999) Essential components of the Ti plasmid trb system, a type IV macromolecular transporter. J Bacteriol 181:5033–5041
  • Lillehaug D, Lindqvist BH, Birkeland NK (1991) Characterization of +LC3, a Lactococcus lactis subsp. cremoris temperate bacteriophage with cohesive single-stranded DNA ends. Appl Environ Microbiol 57:3206–3211
  • Loessner MJ, Inman RB, Lauer P, Calendar R (2000) Complete nucleotide sequence, molecular analysis and genome structure of bacteriophage A118 of Listeria monocytogenes: implications for phage evolution. Mol Microbiol 35:324–340
  • Londoño-Vallejo JA, Dubnau (1993) comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases. Mol Microbiol 9:119–131
  • Lopez P, Perez Ureña MT, Garcia E, Espinosa M (1980) Interactions of homologous and heterologous deoxyribonucleic acids and competent Bacillus subtilis cells. J Bacteriol 142:229–235
  • Lorenz MG, Wackernagel W (1994) Bacterial gene transfer by natural genetic transformation in the environment. Microbiol Rev 58:563–602
  • Losick R, Robbins PW (1967) Mechanism of epsilon-15 conversion studies with a bacterial mutant. J Mol Biol 30:445–455
  • Low KB (1972) Escherichia coli K-12 F-prime factors, old and new. Bacteriol Rev 36:587–607
  • Lu J, Frost LS (2005) Mutations in the C-terminal region of TraM provide evidence for in vivo TraM-TraD interactions during F-plasmid conjugation. J Bacteriol 187:4767–4773
  • Lu J, Wong JJ, Edwards RA, Manchak J, Frost LS, Glover JN (2008) Structural basis of specific TraD-TraM recognition during F plasmid-mediated bacterial conjugation. Mol Microbiol 70:89–99
  • Lu J, Peng Y, Arutyunov D, Frost LS, Glover JN (2012) Error-prone PCR mutagenesis reveals functional domains of a bacterial transcriptional activator, TraJ. J Bacteriol 194:3670–3677
  • Luchansky JB, Kleeman EG, Raya RR, Klaenhammer TR (1989) Genetic transfer systems for delivery of plasmid deoxyribonucleic acid to Lactobacillus acidophilus ADH: conjugation, electroporation, and transduction. J Dairy Sci 72:1408–1417
  • Lum PL, Rodgers ME, Schildbach JF (2002) TraY DNA recognition of its two F factor binding sites. J Mol Biol 321:563–578
  • Lundrigan MD, Lancaster JH, Earhart CF (1983) UC-1, a new bacteriophage that uses the tonA polypeptide as its receptor. J Virol 45:700–707
  • Lyras D, Chan AW, McFarlane J, Stanisich VA (1994) The surface exclusion system of RP1: investigation of the roles of trbJ and trbK in the surface exclusion, transfer, and slow-growth phenotypes. Plasmid 32:254–261
  • Ma C, Redfield RJ (2000) Point mutations in a peptidoglycan biosynthesis gene cause competence induction in Haemophilus influenzae. J Bacteriol 182:3323–3330
  • Ma XX, Ito T, Kondo Y, Cho M, Yoshizawa Y, Kaneko J, Katai A, Higashiide M, Li S, Hiramatsu K (2008) Two different Panton-Valentine leukocidin phage lineages predominate in Japan. J Clin Microbiol 46:3246–3258
  • Ma L, Conover M, Lu H, Parsek MR, Bayles K, Wozniak DJ (2009) Assembly and development of the Pseudomonas aeruginosa biofilm matrix. PLoS Pathog 5:e1000354
  • Macleod CM, Krauss MR (1947) Stepwise intratype transformation of Pneumococcus from R to S by way of a variant intermediate in capsular polysaccharide production. J Exp Med 86:439–452
  • MacNeil D, Howe MM, Brill WJ (1980) Isolation and characterization of lambda specialized transducing bacteriophages carrying Klebsiella pneumoniae nif genes. J Bacteriol 141:1264–1271
  • Male CJ, Christensen JR (1970) Synthesis of messenger ribonucleic acid after bacteriophage T1 infection. J Virol 6:727–737
  • Malke H (1969) Transduction of Streptococcus pyogenes K 56 by temperature-sensitive mutants of the transducing phage A 25. Z Naturforsch B 24:1556–1561
  • Malke H (1970) Resistance pattern and genetics of erythromycin-resistant mutants of Streptococcus pyogenes. J Gen Microbiol 64:353–363
  • Malke H (1972) Transductional analysis of resistance to lincomycin and erythromycin in Streptococcus pyogenes. Z Allg Mikrobiol 12:469–478
  • Maneewannakul K, Ippen-Ihler K (1993) Construction and analysis of F plasmid traR, trbJ, and trbH mutants. J Bacteriol 175:1528–1531
  • Maneewannakul S, Kathir P, Moore D, Le LA, Wu JH, Ippen-Ihler K (1987) Location of F plasmid transfer operon genes traC and traW and identification of the traW product. J Bacteriol 169:5119–5124
  • Maneewannakul S, Maneewannakul K, Ippen-Ihler K (1991) Characterization of trbC, a new F plasmid tra operon gene that is essential to conjugative transfer. J Bacteriol 173:3872–3878
  • Maneewannakul S, Kathir P, Ippen-Ihler K (1992a) Characterization of the F plasmid mating aggregation gene traN and of the new F transfer region locus trbE. J Mol Biol 225:299–311
  • Maneewannakul S, Maneewannakul K, Ippen-Ihler K (1992b) Characterization, localization, and sequence of F transfer region products: the pilus assembly gene product, TraW, and a new product, TrbI. J Bacteriol 174:5567–5574
  • Maneewannakul K, Maneewannakul S, Ippen-Ihler K (1993) Synthesis of F pilin. J Bacteriol 175:1384–1391
  • Maneewannakul K, Maneewannakul S, Ippen-Ihler K (1995) Characterization of traX, the F plasmid locus required for acetylation of F-pilin subunits. J Bacteriol 177:2957–2964
  • Manning PA, Beutin L, Achtman M (1980) Outer membrane of Escherichia coli: properties of the F sex factor traT protein which is involved in surface exclusion. J Bacteriol 142:285–294
  • Manning PA, Morelli G, Achtman M (1981) TraG protein of the F sex factor of Escherichia coli K-12 and its role in conjugation. Proc Natl Acad Sci USA 78:7487–7491
  • Mark Glover JN, Chaulk SG, Edwards RA, Arthur D, Lu J, Frost LS (2015) The FinO family of bacterial RNA chaperones. Plasmid 78:79–87
  • Marks LR, Mashburn-Warren L, Federle MJ, Hakansson AP (2014) Streptococcus pyogenes biofilm growth in vitro and in vivo and its role in colonization, virulence, and genetic exchange. J Infect Dis 210:25–34
  • Marrero R, Chiafari FA, Lovett PS (1981) High-frequency elimination of SP02 prophage from Bacillus subtilis by plasmid transformation. J Virol 39:318–320
  • Marrero R, Young FE, Yasbin RE (1984) Characterization of interspecific plasmid transfer mediated by Bacillus subtilis temperate bacteriophage SP02. J Bacteriol 160:458–461
  • Marshall BJ, Warren JR (1984) Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet 1:1311–1315
  • Mathis LS, Scocca JJ (1982) Haemophilus influenzae and Neisseria gonorrhoeae recognize different specificity determinants in the DNA uptake step of genetic transformation. J Gen Microbiol 128:1159–1161
  • Matsushiro A (1963) Specialized transduction of tryptophan markers in Escherichia coli K12 by bacteriophage phi-80. Virology 19:475–482
  • Maxted WR (1952) Enhancement of streptococcal bacteriophage lysis by hyaluronidase. Nature 170:1020–1021
  • McBroom AJ, Kuehn MJ (2007) Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response. Mol Microbiol 63:545–558
  • McCarthy D, Kupfer DM (1987) Electron microscopy of single-stranded structures in the DNA of competent Haemophilus influenzae cells. J Bacteriol 169:565–571
  • McCarty M (1946) Chemical nature and biological specificity of the substance inducing transformation of pneumococcal types. Bacteriol Rev 10:63–71
  • McCarty M, Avery OT (1946) Studies on the chemical nature of the substance inducing transformation of pneumococcal types; effect of desoxyribonuclease on the biological activity of the transforming substance. J Exp Med 83:89–96
  • McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, Hou S, Layman D, Leonard S, Nguyen C, Scott K, Holmes A, Grewal N, Mulvaney E, Ryan E, Sun H, Florea L, Miller W, Stoneking T, Nhan M, Waterston R, Wilson RK (2001) Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413:852–856
  • McKay LL, Baldwin KA (1974) Simultaneous loss of proteinase- and lactose-utilizing enzyme activities in Streptococcus lactis and reversal of loss by transduction. Appl Microbiol 28:342–346
  • McKay LL, Cords BR, Baldwin KA (1973) Transduction of lactose metabolism in Streptococcus lactis C2. J Bacteriol 115:810–815
  • McMillan DJ, Geffers R, Buer J, Vlaminckx BJ, Sriprakash KS, Chhatwal GS (2007) Variations in the distribution of genes encoding virulence and extracellular proteins in group A Streptococcus are largely restricted to 11 genomic loci. Microbes Infect 9:259–270
  • McShan WM, Nguyen SV (2016) The bacteriophages of Streptococcus pyogenes. In: Ferretti JJ, Stevens DL, Fischetti VA (eds) Streptococcus pyogenes: basic biology to clinical manifestations. University of Oklahoma Health Sciences Center, Oklahoma
  • McShan WM, Tang YF, Ferretti JJ (1997) Bacteriophage T12 of Streptococcus pyogenes integrates into the gene for a serine tRNA. Mol Microbiol 23:719–728
  • Meier P, Berndt C, Weger N, Wackernagel W (2002) Natural transformation of Pseudomonas stutzeri by single-stranded DNA requires type IV pili, competence state and comA. FEMS Microbiol Lett 207:75–80
  • Meijers JA, Winkler KC, Stobberingh EE (1981) Resistance transfer in mixed cultures of Staphylococcus aureus. J Med Microbiol 14:21–39
  • Méjean V, Claverys JP (1988) Polarity of DNA entry in transformation of Streptococcus pneumoniae. Mol Gen Genet 213:444–448
  • Miao R, Guild WR (1970) Competent Diplococcus pneumoniae accept both single- and double-stranded deoxyribonucleic acid. J Bacteriol 101:361–364
  • Mikkonen M, Räisänen L, Alatossava T (1996) The early gene region completes the nucleotide sequence of Lactobacillus delbrueckii subsp. lactis phage LL-H. Gene 175:49–57
  • Minkley EG Jr, Willetts NS (1984) Overproduction, purification and characterization of the F traT protein. Mol Gen Genet 196:225–235
  • Mitsuhashi S, Oshima H, Kawaharada U, Hashimoto H (1965) Drug resistance of staphylococci. I. Transduction of tetracycline resistance with phage lysates obtained from multiply resistant staphylococci. J Bacteriol 89:967–976
  • Mohan S, Aghion J, Guillen N, Dubnau D (1989) Molecular cloning and characterization of comC, a late competence gene of Bacillus subtilis. J Bacteriol 171:6043–6051
  • Mojica-A T, Middleton RB (1971) Fertility of Salmonella typhimurium crosses with Escherichia coli. J Bacteriol 108:1161–1167
  • Molin S, Tolker-Nielsen T (2003) Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure. Curr Opin Biotechnol 14:255–261
  • Moon BY, Park JY, Robinson DA, Thomas JC, Park YH, Thornton JA, Seo KS (2016) Mobilization of genomic islands of Staphylococcus aureus by temperate bacteriophage. PLoS One 11:e0151409
  • Moore D, Wu JH, Kathir P, Hamilton CM, Ippen-Ihler K (1987) Analysis of transfer genes and gene products within the traB-traC region of the fertility factor F. J Bacteriol 169:3994–4002
  • Moore D, Maneewannakul K, Maneewannakul S, Wu JH, Ippen-Ihler K, Bradley DE (1990) Characterization of the F-plasmid conjugative transfer gene traU. J Bacteriol 172:4263–4270
  • Moore D, Hamilton CM, Maneewannakul K, Mintz Y, Frost LS, Ippen-Ihler K (1993) The Escherichia coli K-12 F plasmid gene traX is required for acetylation of F pilin. J Bacteriol 175:1375–1383
  • Morrison DA (1977) Transformation in pneumococcus: existence and properties of a complex involving donor deoxyribonucleate single strands in eclipse. J Bacteriol 132:576–583
  • Morrison DA, Guild WR (1972) Transformation and deoxyribonucleic acid size: extent of degradation on entry varies with size of donor. J Bacteriol 112:1157–1168
  • Morrison TG, Malamy MH (1971) T7 translational control mechanisms and their inhibition by F factors. Nature (Lond) New Biol 231:37–41
  • Morse ML (1959) Transduction by staphylococcal bacteriophage. Proc Natl Acad Sci USA 45:722–727
  • Morse ML, Lederberg EM, Lederberg J (1956) Transduction in Escherichia coli K-12. Genetics 41:142–156
  • Nakamura S, Higashiyama Y, Izumikawa K, Seki M, Kakeya H, Yamamoto Y, Yanagihara K, Miyazaki Y, Mizuta Y, Kohno S (2008) The roles of the quorum-sensing system in the release of extracellular DNA, lipopolysaccharide, and membrane vesicles from Pseudomonas aeruginosa. Jpn J Infect Dis 61:375–378
  • Nakayama J, Takanami Y, Horii T, Sakuda S, Suzuki A (1998) Molecular mechanism of peptide-specific pheromone signaling in Enterococcus faecalis: functions of pheromone receptor TraA and pheromone-binding protein TraC encoded by plasmid pPD1. J Bacteriol 180:449–456
  • Nakayama-Imaohji H, Hirota K, Yamasaki H, Yoneda S, Nariya H, Suzuki M, Secher T, Miyake Y, Oswald E, Hayashi T, Kuwahara T (2016) DNA inversion regulates outer membrane vesicle production in Bacteroides fragilis. PLoS One 11:e0148887
  • Nedenskov-Sorensen P, Bukholm G, Bovre K (1990) Natural competence for genetic transformation in Campylobacter pylori. J Infect Dis 161:365–366
  • Neelapu NRN, Nammi D, Pasupuleti AMC, Challa S (2016) Targets against Helicobacter pylori and other tumor-producing bacteria. In: Villa, Viñas (eds) New weapons to control bacterial growth. Springer, Hiedelberg, pp 239–279
  • Nguewa PA, Villa TG, Notario V (2016) Microbiome control in the prevention and early management of cancer. In: Villa, Viñas (eds) New weapons to control bacterial growth. Springer, Hiedelberg, pp 219–237
  • Ni L, Jensen SO, Ky Tonthat N, Berg T, Kwong SM, Guan FH, Brown MH, Skurray RA, Firth N, Schumacher MA (2009) The Staphylococcus aureus pSK41 plasmid-encoded ArtA protein is a master regulator of plasmid transmission genes and contains a RHH motif used in alternate DNA-binding modes. Nucleic Acids Res 37:6970–6983
  • Nickel L, Goodgal SH (1964) Effect of interspecific transformation on linkage relationships of markers in Haemophilus influenzae and Haemophilus parainfluenzae. J Bacteriol 88:1538–1544
  • Nielsen J, Hansen FG, Hoppe J, Friedl P, von Meyenburg K (1981) The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli. Mol Gen Genet 184:33–39
  • Nizet V, Colina KF, Almquist JR, Rubens CE, Smith AL (1996) A virulent nonencapsulated Haemophilus influenzae. J Infect Dis 173:180–186
  • Notani N, Goodgal SH (1966) On the nature of recombinants formed during transformation in Hemophilus influenzae. J Gen Physiol 49:197–209
  • O’Connor M, Peifer M, Bender W (1989) Construction of large DNA segments in Escherichia coli. Science 244:1307–1312
  • Okubo S, Romig WR (1965) Comparison of ultraviolet sensitivity of Bacillus subtilis bacteriophage SPO2 and its infectious DNA. J Mol Biol 14:130–142
  • Olson JW, Maier RJ (2002) Molecular hydrogen as an energy source for Helicobacter pylori. Science 298:1788–1790
  • Onishi Y (1975) F factor promotes turnover of stable RNA in Escherichia coli. Science 187:257–258
  • Ostro MJ, Giacomoni D, Dray S (1977) Incorporation of high molecular weight RNA into large artificial lipid vesicles. Biochem Biophys Res Commun 76:836–842
  • Ozeki H (1959) Chromosome fragments participating in transduction in Salmonella typhimurium. Genetics 44:457–470
  • Pakula R, Walczak W (1963) On the nature of competence of transformable streptococci. J Gen Microbiol 31:125–133
  • Palefski S, Hemphill HE, Kolenbrander PE, Whiteley HR (1972) Dominance relationships in mixedly infected Bacillus subtilis. J Virol 9:594–601
  • Panicker MM, Minkley EG Jr (1992) Purification and properties of the F sex factor TraD protein, an inner membrane conjugal transfer protein. J Biol Chem 267:12761–12766
  • Pansegrau W, Lanka E (1996) Mechanisms of initiation and termination reactions in conjugative DNA processing. Independence of tight substrate binding and catalytic activity of relaxase (TraI) of IncPalpha plasmid RP4. J Biol Chem 271:13068–13076
  • Pantaloni D, Le Clainche C, Carlier MF (2001) Mechanism of actin-based motility. Science 292:1502–1506
  • Parisi JT, Baldwin JN, Sottile M, Vidal L (1976) Location of the coagulase gene in Staphylococcus aureus. J Med Microbiol 9:111–114
  • Pattee PA, Kloos WE, Bodensteiner JB, Zara A (1968) Homogeneity in a Staphylococcus aureus transducing fragment. J Virol 2:652–654
  • Peng Y, Lu J, Wong JJ, Edwards RA, Frost LS, Mark Glover JN (2014) Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM. J Mol Biol 426:3783–3795
  • Pereira MS, Barreto VP, Siqueira-Júnior JP (1997) Phage-mediated transfer of tetracycline resistance in Staphylococcus aureus isolated from cattle in Brazil. Microbios 92:147–155
  • Perumal NB, Minkley EG Jr (1984) The product of the F sex factor traT surface exclusion gene is a lipoprotein. J Biol Chem 259(9):5357–5360
  • Pincock S (2005) Nobel Prize winners Robin Warren and Barry Marshall. Lancet 366:1429
  • Pittman M (1931) Variation and type specificity in the bacterial species Hemophilus influenzae. J Exp Med 53:471–492
  • Podvin L, Steinmetz M (1992) A degU-containing SP beta prophage complements superactivator mutations affecting the Bacillus subtilis degSU operon. Res Microbiol 143:559–567
  • Pomrenke ME, Ferretti JJ (1989) Physical maps of the streptococcal bacteriophage A25 and C1 genomes. J Basic Microbiol 29:395–398
  • Postel EH, Goodgal SH (1966) Uptake of “single-stranded” DNA in Hemophilus influenzae and its ability to transform. J Mol Biol 16:317–327
  • Pritchard RH, Chandler MG, Collins J (1975) Independence of F replication and chromosome replication in Escherichia coli. Mol Gen Genet 138:143–155
  • Puck TT (1949) A reversible transformation of T1 bacteriophage. J Bacteriol 57:647–655
  • Pusch O, Kalyanaraman R, Tucker LD, Wells JM, Ramratnam B, Boden D (2006) An anti-HIV microbicide engineered in commensal bacteria: secretion of HIV-1 fusion inhibitors by lactobacilli. AIDS 20:1917–1922
  • Quinn RW (1982) Epidemiology of group A streptococcal infections—their changing frequency and severity. Yale J Biol Med 55:265–270
  • Rabel C, Grahn AM, Lurz R, Lanka E (2003) The VirB4 family of proposed traffic nucleoside triphosphatases: common motifs in plasmid RP4 TrbE are essential for conjugation and phage adsorption. J Bacteriol 185:1045–1058
  • Ranhand JM (1969) Competence in Haemophilus influenzae. A role for inosine and lactate in the primary cell-deoxyribonucleic acid attachment reaction. J Gen Microbiol 57:257–262
  • Ranhand JM, Lichstein HC (1969) Effect of selected antibiotics and other inhibitors on competence development in Haemophilus influenzae. J Gen Microbiol 55:37–43
  • Ravin V, Sasaki T, Räisänen L, Riipinen KA, Alatossava T (2006) Effective plasmid pX3 transduction in Lactobacillus delbrueckii by bacteriophage LL-H. Plasmid 55:184–193
  • Ream LW, Margossian L, Clark AJ, Hansen FG, von Meyenburg K (1980) Genetic and physical mapping of recF in Escherichia coli K-12. Mol Gen Genet 180:115–121
  • Redfield RJ, Cameron AD, Qian Q, Hinds J, Ali TR, Kroll JS, Langford PR (2005) A novel CRP-dependent regulon controls expression of competence genes in Haemophilus influenzae. J Mol Biol 347:735–747
  • Redfield RJ, Findlay WA, Bossé J, Kroll JS, Cameron AD, Nash JH (2006) Evolution of competence and DNA uptake specificity in the Pasteurellaceae. BMC Evol Biol 6:82
  • Regué M, Fabregat C, Viñas M (1991) A generalized transducing bacteriophage for Serratia marcescens. Res Microbiol 142:23–27
  • Reiter B (1949) Lysogenic strains of lactic streptococci. Nature 164:667–668
  • Renelli M, Matias V, Lo RY, Beveridge TJ (2004) DNA-containing membrane vesicles of Pseudomonas aeruginosa PAO1 and their genetic transformation potential. Microbiology 150:2161–2169
  • Resch G, Francois P, Morisset D, Stojanov M, Bonetti EJ, Schrenzel J, Sakwinska O, Moreillon P (2013) Human-to-bovine jump of Staphylococcus aureus CC8 is associated with the loss of a beta-hemolysin converting prophage and the acquisition of a new staphylococcal cassette chromosome. PLoS One 8:e58187
  • Rhoades M, Thomas CA Jr (1968) The P22 bacteriophage DNA molecule. II. Circular intracellular forms. J Mol Biol 37:41–61
  • Rhoades M, MacHattie LA, Thomas CA Jr (1968) The P22 bacteriophage DNA molecule. I. The mature form. J Mol Biol 37:21–40
  • Rice KC, Mann EE, Endres JL, Weiss EC, Cassat JE, Smeltzer MS, Bayles KW (2007) The cidA murein hydrolase regulator contributes to DNA release and biofilm development in Staphylococcus aureus. Proc Natl Acad Sci USA 104:8113–8118
  • Rippon JE (1952) A new serological division of Staphylococcus aureus bacteriophages: group G. Nature 170:287
  • Ritz HL, Baldwin JN (1961) Transduction of capacity to produce staphylococcal penicillinase. Proc Soc Exp Biol Med 107:678–680
  • Robbins PW, Keller JM, Wright A, Bernstein RL (1965) Enzymatic and kinetic studies on the mechanism of o-antigen conversion by bacteriophage epsilon-15. J Biol Chem 240:384–390
  • Roberts MD, Martin NL, Kropinski AM (2004) The genome and proteome of coliphage T1. Virology 318:245–266
  • Rocourt J (1986) Bacteriophages and bacteriocins of the genus Listeria. Zentralbl Bakteriol Mikrobiol Hyg A 261:12–28
  • Rosenthal R, Toye PA, Korman RZ, Zahler SA (1979) The prophage of SP beta c2dcitK1, A defective specialized transducing phage of Bacillus subtilis. Genetics 92:721–739
  • Roszczyk E, Goodgal S (1975) Methylase activities from Haemophilus influenzae that protect Haemophilus parainfluenzae transforming deoxyribonucleic acid from inactivation by Haemophilus influenzae endonuclease R. J Bacteriol 123:287–293
  • Rothman JL (1965) Transduction studies on the relation between prophage and host chromosome. J Mol Biol 12:892–912
  • Rountree PM (1949) The serological differentiation of staphylococcal bacteriophages. J Gen Microbiol 3:164–173
  • Rutberg L (1982) Temperate bacteriophages in Bacillus subtilis. In: Dudnau (ed) The molecular biology of the Bacilli. Academic, New York
  • Rutberg L, Armentrout RW, Jonasson J (1972) Unrelatedness of temperate Bacillus subtilis bacteriophages SP02 and phi105. J Virol 9:732–737
  • Rybchin VN (1984) Genetics of bacteriophage phi 80—a review. Gene 27:3–11
  • Sadykov MR, Bayles KW (2012) The control of death and lysis in staphylococcal biofilms: a coordination of physiological signals. Curr Opin Microbiol 15:211–215
  • Saitoh T, Hiraga S (1975) F deoxyribonucleic acid superinfected into phenocopies of donor strains. J Bacteriol 121:1007–1013
  • Sanchini A, Del Grosso M, Villa L, Ammendolia MG, Superti F, Monaco M, Pantosti A (2014) Typing of Panton-Valentine leukocidin-encoding phages carried by methicillin-susceptible and methicillin-resistant Staphylococcus aureus from Italy. Clin Microbiol Infect 20:O840–O846
  • Sanderson KE (1967) Revised linkage map of Salmonella typhimurium. Bacteriol Rev 31:354–372
  • Sanderson KE, Demerec M (1965) The linkage map of Salmonella typhimurium. Genetics 51:897–913
  • Sanderson KE, Hessel A, Rudd KE (1995) Genetic map of Salmonella typhimurium, edition VIII. Microbiol Rev 59:241–303
  • Sastre JI, Cabezón E, de la Cruz F (1998) The carboxyl terminus of protein TraD adds specificity and efficiency to F-plasmid conjugative transfer. J Bacteriol 180:6039–6042
  • Sato K, Matsushiro A (1965) The tryptophan operon regulated by phage immunity. J Mol Biol 14:608–610
  • Saunders NJ, Peden JF, Moxon ER (1999) Absence in Helicobacter pylori of an uptake sequence for enhancing uptake of homospecific DNA during transformation. Microbiology 145:3523–3528
  • Schandel KA, Maneewannakul S, Vonder Haar RA, Ippen-Ihler K, Webster RE (1990) Nucleotide sequence of the F plasmid gene, traC, and identification of its product. Gene 96:137–140
  • Schandel KA, Muller MM, Webster RE (1992) Localization of TraC, a protein involved in assembly of the F conjugative pilus. J Bacteriol 174:3800–3806
  • Scherzer E, Auer B, Schweiger M (1987) Identification, purification, and characterization of Escherichia coli virus T1 DNA methyltransferase. J Biol Chem 262:15225–15231
  • Schmidt H, Hensel M (2004) Pathogenicity islands in bacterial pathogenesis. Clin Microbiol Rev 17:14–56
  • Schroeder CJ, Pattee PA (1984) Transduction analysis of transposon Tn551 insertions in the trp-thy region of the Staphylococcus aureus chromosome. J Bacteriol 157:533–537
  • Schultz EW (1945) Listerella infections: a review. Stanford Med Bull 3:135–151
  • Schwesinger MD, Novick RP (1975) Prophage-dependent plasmid integration in Staphylococcus aureus. J Bacteriol 123:724–738
  • Sedgwick B, Setlow JK (1976) Single-stranded regions in transforming deoxyribonucleic acid after uptake by competent Haemophilus influenzae. J Bacteriol 125:588–594
  • Sermonti G, Bandiera M, Spadasermonti I (1966) New approach to the genetics of Streptomyces coelicolor. J Bacteriol 91:384–392
  • Seto H, Tomasz A (1974) Early stages in DNA binding and uptake during genetic transformation of pneumococci. Proc Natl Acad Sci USA 71:1493–1498
  • Seto H, Tomasz A (1975) Selective release of a deoxyribonucleic acid-binding factor from the surface of competent pneumococci. J Bacteriol 124:969–976
  • Seto H, Lopez R, Garrigan O, Tomasz A (1975a) Nucleolytic degradation of homologous and heterologous deoxyribonucleic acid molecules at the surface of competent pneumococci. J Bacteriol 222:676–685
  • Seto H, Lopez R, Tomasz A (1975b) Cell surface located deoxyribonucleic acid receptors in transformable pneumococci. J Bacteriol 122:1339–1350
  • Shapiro JA, Dean DH, Halvorson HO (1974) Low-frequency specialized transduction with Bacillus subtilis bacteriophage phi 105. Virology 62:393–403
  • Shen Y, Giardino Torchia ML, Lawson GW, Karp CL, Ashwell JD, Mazmanian SK (2012) Outer membrane vesicles of a human commensal mediate immune regulation and disease protection. Cell Host Microbe 12:509–520
  • Sherman JM, Wing HU (1937) Attempts to reveal sex in bacteria; with some light on fermentative variability in the coli-aerogenes group. J Bacteriol 33:315–321
  • Short SA, White DC, Kaback HR (1972) Active transport in isolated bacterial membrane vesicles. V. The transport of amino acids by membrane vesicles prepared from Staphylococcus aureus. J Biol Chem 247:298–304
  • Shpakovski GV, Karakashly MP, Berlin YA (1989) Lambda plac10 transducing bacteriophage: DNA primary structure of the region of the abnormal excision. FEBS Lett 258:171–174
  • Sikora B, Eoff RL, Matson SW, Raney KD (2006) DNA unwinding by Escherichia coli DNA helicase I (TraI) provides evidence for a processive monomeric molecular motor. J Biol Chem 281(47):36110–36116
  • Sikorski J, Graupner S, Lorenz MG, Wackernagel W (1998) Natural genetic transformation of Pseudomonas stutzeri in a non-sterile soil. Microbiology 144:569–576
  • Sisco KL, Smith HO (1979) Sequence-specific DNA uptake in Haemophilus transformation. Proc Natl Acad Sci USA 76:972–976
  • Skjold SA, Maxted WR, Wannamaker LW (1982) Transduction of the genetic determinant for streptolysin S in group A streptococci. Infect Immun 38:183–188
  • Smeets LC, Kusters JG (2002) Natural transformation in Helicobacter pylori: DNA transport in an unexpected way. Trends Microbiol 10:159–162
  • Smeets LC, Bijlsma JJ, Kuipers EJ, Vandenbroucke-Grauls CM, Kusters JG (2000) The dprA gene is required for natural transformation of Helicobacter pylori. FEMS Immunol Med Microbiol 27:99–102
  • Smith WE (1944) Observations indicating a sexual mode of reproduction in a common bacterium (Bacteroides funduliformis). J Bacteriol 47:417–418
  • Smith HO (1980) New insights into how bacteria take up DNA during transformation. Am J Trop Med Hyg 29:1085–1088
  • Smith HO, Tomb JF, Dougherty BA, Fleischmann RD, Venter JC (1995) Frequency and distribution of DNA uptake signal sequences in the Haemophilus influenzae Rd genome. Science 269:538–540
  • Soler N, Krupovic M, Marguet E, Forterre P (2015) Membrane vesicles in natural environments: a major challenge in viral ecology. ISME J 9:793–796
  • Solomon JM, Grossman AD (1996) Who’s competent and when: regulation of natural genetic competence in bacteria. Trends Genet 12:150–155
  • Spilman MS, Damle PK, Dearborn AD, Rodenburg CM, Chang JR, Wall EA, Christie GE, Dokland T (2012) Assembly of bacteriophage 80alpha capsids in a Staphylococcus aureus expression system. Virology 434:242–250
  • Spizizen J (1958) Transformation of biochemically deficient strains of Bacillus subtilis by deoxyribonucleate. Proc Natl Acad Sci USA 4:1072–1078
  • Steinhart WL, Herriott RM (1968) Fate of recipient deoxyribonucleic acid during transformation in Haemophilus influenzae. J Bacteriol 96:1718–1724
  • Stewart GJ, Carlson CA, Ingraham JL (1983) Evidence for an active role of donor cells in natural transformation of Pseudomonas stutzeri. J Bacteriol 156:30–35
  • Stocker BA, Zinder ND, Lederberg J (1953) Transduction of flagellar characters in Salmonella. J Gen Microbiol 9:410–433
  • Stuart JG, Ferretti JJ (1973) Transduction of rifampin resistance in group A streptococci. J Bacteriol 115:709–710
  • Stuart JG, Ferretti JJ (1978) Genetic analysis of antibiotic resistance in Streptococcus pyogenes. J Bacteriol 133:852–859
  • Stuart SE, Welshimer HJ (1973) Intrageneric relatedness of Listeria Pirie. Int J Syst Bacteriol 23:8–14
  • Stuy JH (1976) Restriction enzymes do not play a significant role in Haemophilus homospecific or heterospecific transformation. J Bacteriol 128:212–220
  • Stuy JH (1980) Chromosomally integrated conjugative plasmids are common in antibiotic-resistant Haemophilus influenzae. J Bacteriol 142:925–930
  • Stuy JH, Van der Have B (1971) Degradation of adsorbed transforming DNA by Haemophilus influenzae. J Gen Microbiol 65:147–152
  • Sugino Y, Hirota Y (1962) Conjugal fertility associated with resistance factor R in Escherichia coli. J Bacteriol 84:902–910
  • Sutrina SL, Scocca JJ (1979) Haemophilus influenzae periplasmic protein which binds deoxyribonucleic acid: properties and possible participation in genetic transformation. J Bacteriol 139:1021–1027
  • Sword CP, Pickett MJ (1961) The isolation and characterization of bacteriophages from Listeria monocytogenes. J Gen Microbiol 25:241248
  • Tallent SM, Langston TB, Moran RG, Christie GE (2007) Transducing particles of Staphylococcus aureus pathogenicity island SaPI1 are comprised of helper phage-encoded proteins. J Bacteriol 189:7520–7524
  • Tanaka S, Matsushiro A (1985) Characterization and sequencing of the region containing gene N, the nutL site and t L1 terminator of bacteriophage phi 80. Gene 38(1–3):119–129
  • Tandberg J, Oliver C, Lagos L, Gaarder M, Yáñez AJ, Ropstad E, Winther-Larsen HC (2017) Membrane vesicles from Piscirickettsia salmonis induce protective immunity and reduce development of salmonid rickettsial septicemia in an adult zebrafish model. Fish Shellfish Immunol 67:189–198
  • Tashiro Y, Hasegawa Y, Shintani M, Takaki K, Ohkuma M, Kimbara K, Futamata H (2017) Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells. Front Microbiol 8:571
  • Tatum EL, Lederberg J (1947) Gene recombination in the bacterium Escherichia coli. J Bacteriol 53:673–684
  • Taylor AL (1963) Bacteriophage-induced mutations in E. coli. Proc Natl Acad Sci USA 50:1043–1051
  • Terschüren PA, Noyer-Weidner M, Trautner TA (1987) Recombinant derivatives of Bacillus subtilis phage Z containing the DNA methyltransferase genes of related methylation-proficient phages. J Gen Microbiol 133:945–952
  • Tetz GV, Artemenko NK, Tetz VV (2009) Effect of DNase and antibiotics on biofilm characteristics. Antimicrob Agents Chemother 53:1204–1209
  • Tomasz A (1970) Cellular metabolism in genetic transformation of pneumococci: requirement for protein synthesis during induction of competence. J Bacteriol 101:860–871
  • Tomasz A (1971) The bacterial cell surface. Nature 234:389–392
  • Tomasz A, Westphal M (1971) Abnormal autolytic enzyme in a pneumococus with altered teichoic acid composition. Proc Natl Acad Sci USA 68:2627–2630
  • Tomasz A, Zanati E, Ziegler R (1971) DNA uptake during genetic transformation and the growing zone of the cell envelope. Proc Natl Acad Sci USA 68:1848–1852
  • Tomb JF (1992) A periplasmic protein disulfide oxidoreductase is required for transformation of Haemophilus influenzae Rd. Proc Natl Acad Sci USA 89:10252–10256
  • Tomb JF, Barcak GJ, Chandler MS, Redfield RJ, Smith HO (1989) Transposon mutagenesis, characterization, and cloning of transformation genes of Haemophilus influenzae Rd. J Bacteriol 171:3796–3302
  • Tomb JF, el-Hajj H, Smith HO (1991) Nucleotide sequence of a cluster of genes involved in the transformation of Haemophilus influenzae Rd. Gene 104:1–10
  • Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, Fleischmann RD, Ketchum KA, Klenk HP, Gill S, Dougherty BA, Nelson K, Quackenbush J, Zhou J, Kirkness EF, Peterson S, Loftus B, Richardson D, Dodson R, Khalak HG, Glodek A, McKenney K, Fitzegerald LM, Lee N, Adams MD, Venter JC (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388:539–547
  • Tomono M, Shiozaki M, Ikeda H (1989) Formation of lambda transducing phage in vitro: involvement of DNA gyrase. J Biochem 105:423–428
  • Tormo MA, Ferrer MD, Maiques E, Ubeda C, Selva L, Lasa I, Calvete JJ, Novick RP, Penades JR (2008) Staphylococcus aureus pathogenicity Island DNA is packaged in particles composed of phage proteins. J Bacteriol 190:2434–2440
  • Tormo-Mas MA, Mir I, Shrestha A, Tallent SM, Campoy S, Lasa I, Barbe J, Novick RP, Christie GE, Penades JR (2010) Moonlighting bacteriophage proteins derepress staphylococcal pathogenicity islands. Nature 465:779–782
  • Traxler BA, Minkley EG Jr (1987) Revised genetic map of the distal end of the F transfer operon: implications for DNA helicase 1, nicking at oriT, and conjugal DNA transport. J Bacteriol 169:3251–3259
  • Tsatsaronis JA, Franch-Arroyo S, Resch U, Charpentier E (2018) Extracellular vesicle RNA: a universal mediator of microbial communication? Trends Microbiol 26:401–410
  • Tsuda M, Karita M, Nakazawa T (1993) Genetic transformation in Helicobacter pylori. Microbiol Immunol 37:85–89
  • Twort FW (1915) An investigation on the nature of ultra-microscopic viruses. The Lancet 186:1241–1243
  • Twort FW, Twort DN (1921) An investigation of influenza. J Hyg 20:85–98
  • Tye BK, Chan RK, Botstein D (1974a) Packaging of an oversize transducing genome by Salmonella phage P22. J Mol Biol 85:485–500
  • Tye BK, Huberman JA, Botstein D (1974b) Non-random circular permutation of phage P22 DNA. J Mol Biol 85:501–528
  • Ubukata K, Konno M, Fujii R (1975) Transduction of drug resistance to tetracycline, chloramphenicol, macrolides, lincomycin and clindamycin with phages induced from Streptococcus pyogenes. J Antibiot (Tokyo) 28:681–688
  • van Biesen T, Söderbom F, Wagner EG, Frost LS (1993) Structural and functional analyses of the FinP antisense RNA regulatory system of the F conjugative plasmid. Mol Microbiol 10:35–43
  • VanWagoner TM, Whitby PW, Morton DJ, Seale TW, Stull TL (2004) Characterization of three new competence-regulated operons in Haemophilus influenzae. J Bacteriol 186:6409–6421
  • Vdovikova S, Gilfillan S, Wang S, Dongre M, Wai SN Hurtado A (2018) Modulation of gene transcription and epigenetics of colon carcinoma cells by bacterial membrane vesicles. Sci Rep 8:7434
  • Veereman Wauters G, Ferrell L, Ostroff JW, Heyman MB (1990) Hyperplastic gastric polyps associated with persistent Helicobacter pylori infection and active gastritis. Am J Gastroenterol 85:1395–1397
  • Velimirov B, Hagemann S (2011) Mobilizable bacterial DNA packaged into membrane vesicles induces serial transduction. Mob Genet Elem 1:80–81
  • Verdino P, Keller W, Strohmaier H, Bischof K, Lindner H, Koraimann G (1999) The essential transfer protein TraM binds to DNA as a tetramer. J Biol Chem 274:37421–37428
  • Verkaik NJ, Benard M, Boelens HA, de Vogel CP, Nouwen JL, Verbrugh HA, Melles DC, van Belkum A, van Wamel WJ (2011) Immune evasion cluster-positive bacteriophages are highly prevalent among human Staphylococcus aureus strains, but they are not essential in the first stages of nasal colonization. Clin Microbiol Infect 17:343–348
  • Villafane R, Zayas M, Gilcrease EB, Kropinski AM, Casjens SR (2008) Genomic analysis of bacteriophage epsilon 34 of Salmonella enterica serovar Anatum (15+). BMC Microbiol 8:227
  • Vivian A, Hopwood DA (1970) Genetic control of fertility in Streptomyces coelicolor A3(2): the IF fertility type. J Gen Microbiol 64:101–117
  • Vlaminckx BJ, Schuren FH, Montijn RC, Caspers MP, Beitsma MM, Wannet WJ, Schouls LM, Verhoef J, Jansen WT (2007) Dynamics in prophage content of invasive and noninvasive M1 and M28 Streptococcus pyogenes isolates in The Netherlands from 1959 to 1996. Infect Immun 75:3673–3679
  • Voll MJ, Goodgal SH (1961) Recombination during transformation in Hemophilus influenzae. Proc Natl Acad Sci USA 47:505–512
  • von Meyenburg K, Hansen FG, Nielsin LD, Riise E (1978) Origin of replication, oriC, or the Escherichia coli chromosome on specialized transducing phages lambda asn. Mol Gen Genet 160:287–295
  • Wagner EF, Ponta H, Schweiger M (1977) Development of E. coli virus T1: the pattern of gene expression. Mol Gen Genet 150:21–28
  • Wagner EF, Auer B, Schweiger M (1979) Development of Escherichia coli virus T1: escape from host restriction. J Virol 29:1229–1231
  • Waksman G, Fronzes R (2010) Molecular architecture of bacterial type IV secretion systems. Trends Biochem Sci 35:691–698
  • Waldron DE, Lindsay JA (2006) Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages. J Bacteriol 188:5578–5585
  • Wang Y, Taylor DE (1990) Natural transformation in Campylobacter species. J Bacteriol 172:949–955
  • Welker NE, Campbell L (1967) Unrelatedness of Bacillus amyloliquefaciens and Bacillus subtilis. J Bacteriol 94:1124–1130
  • Werisch M, Berger U, Berendonk TH (2017) Conjugative plasmids enable the maintenance of low cost non-transmissible plasmids. Plasmid 91:96–104
  • Wessels MR, Moses AE, Goldberg JB, DiCesare TJ (1991) Hyaluronic acid capsule is a virulence factor for mucoid group A streptococci. Proc Natl Acad Sci USA 88:8317–8321
  • Wijffelman CA, Westmaas GC, van de Putte P (1973) Similarity of vegetative map and prophage map of bacteriophage Mu-1. Virology 54:125–134
  • Will WR, Frost LS (2006) Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli. J Bacteriol 188:124–131
  • Willetts NS (1973) Characterization of the F transfer cistron, traL. Genet Res 21:205–213
  • Willetts N (1977) The transcriptional control of fertility of F-like plasmids. J Mol Biol 112:141–148
  • Willetts N, Maule J, McIntire S (1975) The genetic locations of traO, finP and tra-4 on the E. coli K12 sex factor F. Genet Res 26:255–263
  • Williams SL, Schildbach JF (2007) TraY and integration host factor oriT binding sites and F conjugal transfer: sequence variations, but not altered spacing, are tolerated. J Bacteriol 189:3813–3823
  • Wise EM Jr, Alexander SP, Powers M (1973) Adenosine 3′:5′-cyclic monophosphate as a regulator of bacterial transformation. Proc Natl Acad Sci USA 70:471–474
  • Wollman EL, Jacob F (1957) Processes of conjugation and recombination in Escherichia coli. II. Chromosomal location of phage lambda and genetic results of zygotic induction. Ann Inst Pasteur (Paris) 93:323–339
  • Wollman EL, Jacob F (1958) Process of conjugation & recombination in Escherichia coli. V. Mechanism of transference of genetic material. Ann Inst Pasteur (Paris) 95:641–666
  • Wollman E, Wollman E (1925) Sur la tranission “parahéréditaire” de caracteres chez les bacteries. Compt rend soc biol 98:1568–1569
  • Wollman EL, Jacob F, Hayes W (1956) Conjugation and genetic recombination in Escherichia coli K-12. Cold Spring Harb Symp Quant Biol 21:141–162
  • Wong JJ, Lu J, Glover JN (2012) Relaxosome function and conjugation regulation in F-like plasmids—a structural biology perspective. Mol Microbiol 85:602–617
  • Wotherspoon AC, Doglioni C, Diss TC, Pan L, Moschini A, De-Boni M, Isaacson PG (1993) Regression of primary low-grade B-cell gastric lymphoma of mucosa-associated lymphoid tissue type after eradication of Helicobacter pylori. Lancet 342:575–577
  • Wright NT, Raththagala M, Hemmis CW, Edwards S, Curtis JE, Krueger S, Schildbach JF (2012) Solution structure and small angle scattering analysis of TraI (381-569). Proteins 80:2250–2261
  • Wu JH, Ippen-Ihler K (1989) Nucleotide sequence of traQ and adjacent loci in the Escherichia coli K-12 F-plasmid transfer operon. J Bacteriol 171:213–221
  • Xia G, Wolz C (2014) Phages of Staphylococcus aureus and their impact on host evolution. Infect Genet Evol 21:593–601
  • Xia G, Corrigan RM, Winstel V, Goerke C, Grundling A, Peschel A (2011) Wall teichoic acid-dependent adsorption of staphylococcal siphovirus and myovirus. J Bacteriol 193:4006–4009
  • Yagil E, Dolev S, Oberto J, Kislov N, Ramniab N, Weisberg RA (1989) Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificity. J Mol Biol 207:695–717
  • Yamada Y, Nakada D (1975) F-Factor-mediated restriction of bacteriophage T7: protein synthesis in cell-free systems from T7-infected Escherichia coli F- and F+ cells. J Virol 16:1483–1491
  • Yamamoto M, Lindahl L, Nomura M (1976) Synthesis of ribosomal RNA in E. coli: analysis using deletion mutants of a lambda transducing phage carrying ribosomal RNA genes. Cell 7:179–190
  • Yasunaka K, Tsukamoto H, Okubo S, Horiuchi T (1970) Isolation and properties of suppressor-sensitive mutants of Bacillus subtilis bacteriophage SP02. J Virol 5:819–821
  • Yoshikawa M, Akiba T (1961) Studies on transferable drug resistance in bacteria. II Interrelationship between transferable resistance factor and F factor. Jpn J Microbiol 5:375–381
  • Zabriskie JB (1964) The role of temperate bacteriophage in the production of erythrogenic toxin by group A streptococci. J Exp Med 119:761–780
  • Zahler SA, Korman RZ, Rosenthal R, Hemphill HE (1977) Bacillus subtilis bacteriophage SPbeta: localization of the prophage attachment site, and specialized transduction. J Bacteriol 129:556–558
  • Zahler SA, Korman RZ, Thomas C, Fink PS, Weiner MP, Odebralski JM (1987) H2, a temperate bacteriophage isolated from Bacillus amyloliquefaciens strain H. J Gen Microbiol 133:2937–2944
  • Zamenhof S, Alexander HE, Leidy G (1953) Studies on the chemistry of the transforming activity. I. Resistance to physical and chemical agents. J Exp Med 98:373–397
  • Zimmer M, Sattelberger E, Inman RB, Calendar R, Loessner MJ (2003) Genome and proteome of Listeria monocytogenes phage PSA: an unusual case for programmed + 1 translational frameshifting in structural protein synthesis. Mol Microbiol 50:303–317
  • Zinder ND (1955) Bacterial transduction. J Cell Physiol 45:23–49
  • Zinder ND (1960a) Hybrids of Escherichia and Salmonella. Science 131:813–815
  • Zinder ND (1960b) Sexuality and mating in Salmonella. Science 131:924–926
  • Zinder ND, Lederberg J (1952) Genetic exchange in Salmonella. J Bacteriol 64:679–699
  • Zoon KC, Scocca JJ (1975) Constitution of the cell envelope of Haemophilus influenzae in relation to competence for genetic transformation. J Bacteriol 123:666–677
  • Zoon KC, Habersat M, Scocca JJ (1975) Multiple regulatory events in the development of competence for genetic transformation in H. influenzae. J Bacteriol 124:1607–1609
  • Zoon KC, Habersat M, Scocca JJ (1976) Synthesis of envelope polypeptides by Haemophilus influenzae during development of competence for genetic transformation. J Bacteriol 127:545–554
  • Zulty JJ, Barcak GJ (1995) Identification of a DNA transformation gene required for com101A+ expression and supertransformer phenotype in Haemophilus influenzae. Proc Natl Acad Sci USA 92:3616–3220